Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19490 and ABID97_RS19495 are separated by 240 nucleotides ABID97_RS19495 and ABID97_RS19500 are separated by 0 nucleotides ABID97_RS19500 and ABID97_RS19505 are separated by 104 nucleotides
ABID97_RS19490: ABID97_RS19490 - class I SAM-dependent methyltransferase, at 4,023,502 to 4,024,347
_RS19490
ABID97_RS19495: ABID97_RS19495 - glucan biosynthesis protein D, at 4,024,588 to 4,026,186
_RS19495
ABID97_RS19500: ABID97_RS19500 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,026,187 to 4,026,606
_RS19500
ABID97_RS19505: ABID97_RS19505 - ethanolamine permease, at 4,026,711 to 4,028,132
_RS19505
Position (kb) 4024
4025
4026
4027 Strain fitness (log2 ratio) -2
-1
0
1 at 4023.691 kb on + strand, within ABID97_RS19490 at 4023.691 kb on + strand, within ABID97_RS19490 at 4023.692 kb on - strand, within ABID97_RS19490 at 4023.797 kb on - strand, within ABID97_RS19490 at 4024.009 kb on + strand, within ABID97_RS19490 at 4024.009 kb on + strand, within ABID97_RS19490 at 4024.010 kb on - strand, within ABID97_RS19490 at 4024.225 kb on + strand, within ABID97_RS19490 at 4024.226 kb on - strand, within ABID97_RS19490 at 4024.303 kb on + strand at 4024.304 kb on - strand at 4024.483 kb on + strand at 4024.556 kb on + strand at 4024.557 kb on - strand at 4024.757 kb on - strand, within ABID97_RS19495 at 4024.984 kb on + strand, within ABID97_RS19495 at 4025.131 kb on + strand, within ABID97_RS19495 at 4025.132 kb on - strand, within ABID97_RS19495 at 4025.155 kb on + strand, within ABID97_RS19495 at 4025.242 kb on + strand, within ABID97_RS19495 at 4025.242 kb on + strand, within ABID97_RS19495 at 4025.431 kb on + strand, within ABID97_RS19495 at 4025.432 kb on - strand, within ABID97_RS19495 at 4025.432 kb on - strand, within ABID97_RS19495 at 4025.654 kb on - strand, within ABID97_RS19495 at 4025.803 kb on + strand, within ABID97_RS19495 at 4026.025 kb on + strand, within ABID97_RS19495 at 4026.124 kb on + strand at 4026.272 kb on + strand, within ABID97_RS19500 at 4026.437 kb on + strand, within ABID97_RS19500 at 4026.613 kb on - strand at 4026.835 kb on - strand at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.912 kb on + strand, within ABID97_RS19505 at 4026.913 kb on - strand, within ABID97_RS19505 at 4026.913 kb on - strand, within ABID97_RS19505 at 4026.913 kb on - strand, within ABID97_RS19505 at 4027.140 kb on + strand, within ABID97_RS19505 at 4027.140 kb on + strand, within ABID97_RS19505 at 4027.140 kb on + strand, within ABID97_RS19505 at 4027.140 kb on + strand, within ABID97_RS19505 at 4027.141 kb on - strand, within ABID97_RS19505 at 4027.141 kb on - strand, within ABID97_RS19505
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,023,691 + ABID97_RS19490 0.22 +0.4 4,023,691 + ABID97_RS19490 0.22 +1.4 4,023,692 - ABID97_RS19490 0.22 -0.5 4,023,797 - ABID97_RS19490 0.35 +0.4 4,024,009 + ABID97_RS19490 0.60 -0.8 4,024,009 + ABID97_RS19490 0.60 -1.1 4,024,010 - ABID97_RS19490 0.60 +0.1 4,024,225 + ABID97_RS19490 0.85 +0.5 4,024,226 - ABID97_RS19490 0.86 -0.5 4,024,303 + -1.2 4,024,304 - -0.8 4,024,483 + +0.6 4,024,556 + -0.0 4,024,557 - -0.2 4,024,757 - ABID97_RS19495 0.11 -0.4 4,024,984 + ABID97_RS19495 0.25 -0.5 4,025,131 + ABID97_RS19495 0.34 -2.2 4,025,132 - ABID97_RS19495 0.34 -0.6 4,025,155 + ABID97_RS19495 0.35 -2.0 4,025,242 + ABID97_RS19495 0.41 -1.1 4,025,242 + ABID97_RS19495 0.41 -1.3 4,025,431 + ABID97_RS19495 0.53 -0.1 4,025,432 - ABID97_RS19495 0.53 -0.3 4,025,432 - ABID97_RS19495 0.53 -0.6 4,025,654 - ABID97_RS19495 0.67 +0.7 4,025,803 + ABID97_RS19495 0.76 +1.0 4,026,025 + ABID97_RS19495 0.90 +0.4 4,026,124 + +1.2 4,026,272 + ABID97_RS19500 0.20 -1.5 4,026,437 + ABID97_RS19500 0.60 -0.4 4,026,613 - -0.9 4,026,835 - -0.4 4,026,912 + ABID97_RS19505 0.14 -1.2 4,026,912 + ABID97_RS19505 0.14 +0.8 4,026,912 + ABID97_RS19505 0.14 -0.7 4,026,912 + ABID97_RS19505 0.14 -0.0 4,026,912 + ABID97_RS19505 0.14 +0.9 4,026,912 + ABID97_RS19505 0.14 +0.0 4,026,912 + ABID97_RS19505 0.14 +0.0 4,026,913 - ABID97_RS19505 0.14 +0.8 4,026,913 - ABID97_RS19505 0.14 +0.0 4,026,913 - ABID97_RS19505 0.14 -0.1 4,027,140 + ABID97_RS19505 0.30 -0.7 4,027,140 + ABID97_RS19505 0.30 -0.1 4,027,140 + ABID97_RS19505 0.30 +0.5 4,027,140 + ABID97_RS19505 0.30 +0.4 4,027,141 - ABID97_RS19505 0.30 -0.4 4,027,141 - ABID97_RS19505 0.30 +0.1
Or see this region's nucleotide sequence