Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18745 and ABID97_RS18750 are separated by 56 nucleotides ABID97_RS18750 and ABID97_RS18755 are separated by 55 nucleotides ABID97_RS18755 and ABID97_RS18760 overlap by 1 nucleotides ABID97_RS18760 and ABID97_RS18765 are separated by 20 nucleotides ABID97_RS18765 and ABID97_RS18770 are separated by 69 nucleotides
ABID97_RS18745: ABID97_RS18745 - quinone oxidoreductase, at 3,861,956 to 3,862,954
_RS18745
ABID97_RS18750: ABID97_RS18750 - aconitase family protein, at 3,863,011 to 3,863,504
_RS18750
ABID97_RS18755: ABID97_RS18755 - aconitase family protein, at 3,863,560 to 3,864,414
_RS18755
ABID97_RS18760: ABID97_RS18760 - 3-isopropylmalate dehydratase small subunit, at 3,864,414 to 3,865,050
_RS18760
ABID97_RS18765: ABID97_RS18765 - hypothetical protein, at 3,865,071 to 3,865,277
_RS18765
ABID97_RS18770: ABID97_RS18770 - FAD-dependent oxidoreductase, at 3,865,347 to 3,866,582
_RS18770
Position (kb)
3863
3864
3865 Strain fitness (log2 ratio)
-1
0
1 at 3863.271 kb on + strand, within ABID97_RS18750 at 3863.271 kb on + strand, within ABID97_RS18750 at 3863.272 kb on - strand, within ABID97_RS18750 at 3863.334 kb on - strand, within ABID97_RS18750 at 3863.886 kb on - strand, within ABID97_RS18755 at 3863.886 kb on - strand, within ABID97_RS18755 at 3863.886 kb on - strand, within ABID97_RS18755 at 3863.959 kb on + strand, within ABID97_RS18755 at 3863.960 kb on - strand, within ABID97_RS18755 at 3864.554 kb on + strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.875 kb on - strand, within ABID97_RS18760 at 3865.174 kb on + strand, within ABID97_RS18765 at 3865.174 kb on + strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,863,271 + ABID97_RS18750 0.53 -0.5 3,863,271 + ABID97_RS18750 0.53 -0.1 3,863,272 - ABID97_RS18750 0.53 +0.7 3,863,334 - ABID97_RS18750 0.65 -0.1 3,863,886 - ABID97_RS18755 0.38 -0.4 3,863,886 - ABID97_RS18755 0.38 -0.4 3,863,886 - ABID97_RS18755 0.38 -1.3 3,863,959 + ABID97_RS18755 0.47 -0.3 3,863,960 - ABID97_RS18755 0.47 -0.0 3,864,554 + ABID97_RS18760 0.22 -0.4 3,864,762 - ABID97_RS18760 0.55 -1.6 3,864,762 - ABID97_RS18760 0.55 -0.0 3,864,762 - ABID97_RS18760 0.55 +0.5 3,864,875 - ABID97_RS18760 0.72 +1.6 3,865,174 + ABID97_RS18765 0.50 -0.4 3,865,174 + ABID97_RS18765 0.50 +1.1 3,865,175 - ABID97_RS18765 0.50 +0.2 3,865,175 - ABID97_RS18765 0.50 -0.2 3,865,175 - ABID97_RS18765 0.50 +0.6 3,865,175 - ABID97_RS18765 0.50 -0.3
Or see this region's nucleotide sequence