Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18700 and ABID97_RS18705 are separated by 107 nucleotides ABID97_RS18705 and ABID97_RS18710 are separated by 25 nucleotides ABID97_RS18710 and ABID97_RS18715 are separated by 13 nucleotides
ABID97_RS18700: ABID97_RS18700 - LysR substrate-binding domain-containing protein, at 3,852,225 to 3,853,157
_RS18700
ABID97_RS18705: ABID97_RS18705 - acyl-CoA dehydrogenase family protein, at 3,853,265 to 3,854,437
_RS18705
ABID97_RS18710: ABID97_RS18710 - electron transfer flavoprotein subunit beta/FixA family protein, at 3,854,463 to 3,855,212
_RS18710
ABID97_RS18715: ABID97_RS18715 - FAD-binding protein, at 3,855,226 to 3,856,158
_RS18715
Position (kb)
3853
3854
3855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3852.719 kb on - strand, within ABID97_RS18700 at 3852.924 kb on - strand, within ABID97_RS18700 at 3853.352 kb on + strand at 3853.544 kb on + strand, within ABID97_RS18705 at 3853.545 kb on - strand, within ABID97_RS18705 at 3853.545 kb on - strand, within ABID97_RS18705 at 3853.840 kb on - strand, within ABID97_RS18705 at 3853.840 kb on - strand, within ABID97_RS18705 at 3853.918 kb on - strand, within ABID97_RS18705 at 3853.998 kb on + strand, within ABID97_RS18705 at 3854.073 kb on - strand, within ABID97_RS18705 at 3854.239 kb on + strand, within ABID97_RS18705 at 3854.239 kb on + strand, within ABID97_RS18705 at 3854.240 kb on - strand, within ABID97_RS18705 at 3854.432 kb on + strand at 3854.432 kb on + strand at 3854.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,852,719 - ABID97_RS18700 0.53 -1.1 3,852,924 - ABID97_RS18700 0.75 -0.3 3,853,352 + +0.2 3,853,544 + ABID97_RS18705 0.24 +0.3 3,853,545 - ABID97_RS18705 0.24 -1.8 3,853,545 - ABID97_RS18705 0.24 -0.0 3,853,840 - ABID97_RS18705 0.49 +2.1 3,853,840 - ABID97_RS18705 0.49 +0.1 3,853,918 - ABID97_RS18705 0.56 -0.5 3,853,998 + ABID97_RS18705 0.62 +0.2 3,854,073 - ABID97_RS18705 0.69 -0.1 3,854,239 + ABID97_RS18705 0.83 -0.1 3,854,239 + ABID97_RS18705 0.83 +0.2 3,854,240 - ABID97_RS18705 0.83 -0.5 3,854,432 + +0.3 3,854,432 + +0.6 3,854,461 - -0.8
Or see this region's nucleotide sequence