Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18705

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18700 and ABID97_RS18705 are separated by 107 nucleotidesABID97_RS18705 and ABID97_RS18710 are separated by 25 nucleotidesABID97_RS18710 and ABID97_RS18715 are separated by 13 nucleotides ABID97_RS18700: ABID97_RS18700 - LysR substrate-binding domain-containing protein, at 3,852,225 to 3,853,157 _RS18700 ABID97_RS18705: ABID97_RS18705 - acyl-CoA dehydrogenase family protein, at 3,853,265 to 3,854,437 _RS18705 ABID97_RS18710: ABID97_RS18710 - electron transfer flavoprotein subunit beta/FixA family protein, at 3,854,463 to 3,855,212 _RS18710 ABID97_RS18715: ABID97_RS18715 - FAD-binding protein, at 3,855,226 to 3,856,158 _RS18715 Position (kb) 3853 3854 3855Strain fitness (log2 ratio) -2 -1 0 1 2at 3852.719 kb on - strand, within ABID97_RS18700at 3852.924 kb on - strand, within ABID97_RS18700at 3853.352 kb on + strandat 3853.544 kb on + strand, within ABID97_RS18705at 3853.545 kb on - strand, within ABID97_RS18705at 3853.545 kb on - strand, within ABID97_RS18705at 3853.840 kb on - strand, within ABID97_RS18705at 3853.840 kb on - strand, within ABID97_RS18705at 3853.918 kb on - strand, within ABID97_RS18705at 3853.998 kb on + strand, within ABID97_RS18705at 3854.073 kb on - strand, within ABID97_RS18705at 3854.239 kb on + strand, within ABID97_RS18705at 3854.239 kb on + strand, within ABID97_RS18705at 3854.240 kb on - strand, within ABID97_RS18705at 3854.432 kb on + strandat 3854.432 kb on + strandat 3854.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,852,719 - ABID97_RS18700 0.53 -1.1
3,852,924 - ABID97_RS18700 0.75 -0.3
3,853,352 + +0.2
3,853,544 + ABID97_RS18705 0.24 +0.3
3,853,545 - ABID97_RS18705 0.24 -1.8
3,853,545 - ABID97_RS18705 0.24 -0.0
3,853,840 - ABID97_RS18705 0.49 +2.1
3,853,840 - ABID97_RS18705 0.49 +0.1
3,853,918 - ABID97_RS18705 0.56 -0.5
3,853,998 + ABID97_RS18705 0.62 +0.2
3,854,073 - ABID97_RS18705 0.69 -0.1
3,854,239 + ABID97_RS18705 0.83 -0.1
3,854,239 + ABID97_RS18705 0.83 +0.2
3,854,240 - ABID97_RS18705 0.83 -0.5
3,854,432 + +0.3
3,854,432 + +0.6
3,854,461 - -0.8

Or see this region's nucleotide sequence