Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18635

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18625 and ABID97_RS18630 overlap by 4 nucleotidesABID97_RS18630 and ABID97_RS18635 overlap by 4 nucleotidesABID97_RS18635 and ABID97_RS18640 are separated by 51 nucleotidesABID97_RS18640 and ABID97_RS18645 are separated by 2 nucleotides ABID97_RS18625: ABID97_RS18625 - alpha/beta hydrolase, at 3,839,911 to 3,840,849 _RS18625 ABID97_RS18630: ABID97_RS18630 - SDR family oxidoreductase, at 3,840,846 to 3,841,574 _RS18630 ABID97_RS18635: ABID97_RS18635 - enoyl-CoA hydratase-related protein, at 3,841,571 to 3,842,410 _RS18635 ABID97_RS18640: ABID97_RS18640 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 3,842,462 to 3,842,947 _RS18640 ABID97_RS18645: ABID97_RS18645 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,842,950 to 3,844,239 _RS18645 Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -1 0 1at 3840.800 kb on - strandat 3841.145 kb on - strand, within ABID97_RS18630at 3842.103 kb on + strand, within ABID97_RS18635at 3842.898 kb on + strand, within ABID97_RS18640

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,840,800 - +0.8
3,841,145 - ABID97_RS18630 0.41 +0.4
3,842,103 + ABID97_RS18635 0.63 +0.4
3,842,898 + ABID97_RS18640 0.90 -0.6

Or see this region's nucleotide sequence