Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18255

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18245 and ABID97_RS18250 overlap by 25 nucleotidesABID97_RS18250 and ABID97_RS18255 overlap by 61 nucleotidesABID97_RS18255 and ABID97_RS18260 are separated by 679 nucleotides ABID97_RS18245: ABID97_RS18245 - helix-turn-helix domain-containing protein, at 3,768,558 to 3,769,034 _RS18245 ABID97_RS18250: ABID97_RS18250 - DDE-type integrase/transposase/recombinase, at 3,769,010 to 3,769,495 _RS18250 ABID97_RS18255: ABID97_RS18255 - hypothetical protein, at 3,769,435 to 3,770,202 _RS18255 ABID97_RS18260: ABID97_RS18260 - hypothetical protein, at 3,770,882 to 3,771,253 _RS18260 Position (kb) 3769 3770 3771Strain fitness (log2 ratio) -1 0 1 2at 3768.450 kb on + strandat 3769.658 kb on + strand, within ABID97_RS18255at 3769.929 kb on - strand, within ABID97_RS18255at 3770.156 kb on - strandat 3770.290 kb on - strandat 3770.544 kb on + strandat 3770.764 kb on + strandat 3770.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,768,450 + +1.6
3,769,658 + ABID97_RS18255 0.29 +2.1
3,769,929 - ABID97_RS18255 0.64 -0.3
3,770,156 - +1.1
3,770,290 - -0.3
3,770,544 + -0.9
3,770,764 + +0.5
3,770,875 + +1.5

Or see this region's nucleotide sequence