Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18040 and ABID97_RS18045 overlap by 4 nucleotides ABID97_RS18045 and ABID97_RS18050 are separated by 76 nucleotides ABID97_RS18050 and ABID97_RS18055 are separated by 3 nucleotides ABID97_RS18055 and ABID97_RS18060 are separated by 124 nucleotides
ABID97_RS18040: ABID97_RS18040 - NAD(P)-dependent oxidoreductase, at 3,727,422 to 3,728,171
_RS18040
ABID97_RS18045: ABID97_RS18045 - cupin domain-containing protein, at 3,728,168 to 3,728,701
_RS18045
ABID97_RS18050: ABID97_RS18050 - ABC transporter substrate-binding protein, at 3,728,778 to 3,729,944
_RS18050
ABID97_RS18055: ABID97_RS18055 - Crp/Fnr family transcriptional regulator, at 3,729,948 to 3,730,667
_RS18055
ABID97_RS18060: ABID97_RS18060 - HD domain-containing protein, at 3,730,792 to 3,731,382
_RS18060
Position (kb)
3728
3729
3730 Strain fitness (log2 ratio)
-1
0
1 at 3727.800 kb on + strand, within ABID97_RS18040 at 3727.801 kb on - strand, within ABID97_RS18040 at 3727.957 kb on - strand, within ABID97_RS18040 at 3728.558 kb on + strand, within ABID97_RS18045 at 3728.558 kb on + strand, within ABID97_RS18045 at 3728.558 kb on + strand, within ABID97_RS18045 at 3728.559 kb on - strand, within ABID97_RS18045 at 3728.784 kb on - strand at 3728.784 kb on - strand at 3728.801 kb on - strand at 3729.597 kb on + strand, within ABID97_RS18050 at 3729.744 kb on + strand, within ABID97_RS18050 at 3729.744 kb on + strand, within ABID97_RS18050 at 3730.481 kb on - strand, within ABID97_RS18055 at 3730.699 kb on + strand at 3730.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,727,800 + ABID97_RS18040 0.50 -0.3 3,727,801 - ABID97_RS18040 0.51 -0.9 3,727,957 - ABID97_RS18040 0.71 +0.4 3,728,558 + ABID97_RS18045 0.73 +0.3 3,728,558 + ABID97_RS18045 0.73 +0.3 3,728,558 + ABID97_RS18045 0.73 -1.0 3,728,559 - ABID97_RS18045 0.73 +0.3 3,728,784 - -0.0 3,728,784 - -0.5 3,728,801 - -0.9 3,729,597 + ABID97_RS18050 0.70 -0.6 3,729,744 + ABID97_RS18050 0.83 -0.0 3,729,744 + ABID97_RS18050 0.83 -0.9 3,730,481 - ABID97_RS18055 0.74 +0.2 3,730,699 + +0.3 3,730,752 + -0.6
Or see this region's nucleotide sequence