Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18050

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18040 and ABID97_RS18045 overlap by 4 nucleotidesABID97_RS18045 and ABID97_RS18050 are separated by 76 nucleotidesABID97_RS18050 and ABID97_RS18055 are separated by 3 nucleotidesABID97_RS18055 and ABID97_RS18060 are separated by 124 nucleotides ABID97_RS18040: ABID97_RS18040 - NAD(P)-dependent oxidoreductase, at 3,727,422 to 3,728,171 _RS18040 ABID97_RS18045: ABID97_RS18045 - cupin domain-containing protein, at 3,728,168 to 3,728,701 _RS18045 ABID97_RS18050: ABID97_RS18050 - ABC transporter substrate-binding protein, at 3,728,778 to 3,729,944 _RS18050 ABID97_RS18055: ABID97_RS18055 - Crp/Fnr family transcriptional regulator, at 3,729,948 to 3,730,667 _RS18055 ABID97_RS18060: ABID97_RS18060 - HD domain-containing protein, at 3,730,792 to 3,731,382 _RS18060 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -1 0 1at 3727.800 kb on + strand, within ABID97_RS18040at 3727.801 kb on - strand, within ABID97_RS18040at 3727.957 kb on - strand, within ABID97_RS18040at 3728.558 kb on + strand, within ABID97_RS18045at 3728.558 kb on + strand, within ABID97_RS18045at 3728.558 kb on + strand, within ABID97_RS18045at 3728.559 kb on - strand, within ABID97_RS18045at 3728.784 kb on - strandat 3728.784 kb on - strandat 3728.801 kb on - strandat 3729.597 kb on + strand, within ABID97_RS18050at 3729.744 kb on + strand, within ABID97_RS18050at 3729.744 kb on + strand, within ABID97_RS18050at 3730.481 kb on - strand, within ABID97_RS18055at 3730.699 kb on + strandat 3730.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,727,800 + ABID97_RS18040 0.50 -0.3
3,727,801 - ABID97_RS18040 0.51 -0.9
3,727,957 - ABID97_RS18040 0.71 +0.4
3,728,558 + ABID97_RS18045 0.73 +0.3
3,728,558 + ABID97_RS18045 0.73 +0.3
3,728,558 + ABID97_RS18045 0.73 -1.0
3,728,559 - ABID97_RS18045 0.73 +0.3
3,728,784 - -0.0
3,728,784 - -0.5
3,728,801 - -0.9
3,729,597 + ABID97_RS18050 0.70 -0.6
3,729,744 + ABID97_RS18050 0.83 -0.0
3,729,744 + ABID97_RS18050 0.83 -0.9
3,730,481 - ABID97_RS18055 0.74 +0.2
3,730,699 + +0.3
3,730,752 + -0.6

Or see this region's nucleotide sequence