Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15625

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15620 and ABID97_RS15625 are separated by 22 nucleotidesABID97_RS15625 and ABID97_RS15630 are separated by 109 nucleotidesABID97_RS15630 and ABID97_RS15635 are separated by 54 nucleotides ABID97_RS15620: ABID97_RS15620 - cell division protein ZipA C-terminal FtsZ-binding domain-containing protein, at 3,229,548 to 3,230,648 _RS15620 ABID97_RS15625: ABID97_RS15625 - NAD-dependent DNA ligase LigA, at 3,230,671 to 3,232,755 _RS15625 ABID97_RS15630: ABID97_RS15630 - hypothetical protein, at 3,232,865 to 3,233,311 _RS15630 ABID97_RS15635: ABID97_RS15635 - peptide deformylase, at 3,233,366 to 3,233,905 _RS15635 Position (kb) 3230 3231 3232 3233Strain fitness (log2 ratio) -1 0 1 2at 3230.008 kb on - strand, within ABID97_RS15620at 3230.247 kb on + strand, within ABID97_RS15620at 3230.248 kb on - strand, within ABID97_RS15620at 3230.248 kb on - strand, within ABID97_RS15620at 3230.584 kb on - strandat 3232.730 kb on + strandat 3232.730 kb on + strandat 3232.820 kb on + strandat 3232.820 kb on + strandat 3232.820 kb on + strandat 3232.820 kb on + strandat 3232.953 kb on - strand, within ABID97_RS15630at 3232.956 kb on - strand, within ABID97_RS15630at 3232.956 kb on - strand, within ABID97_RS15630at 3232.967 kb on + strand, within ABID97_RS15630at 3232.979 kb on + strand, within ABID97_RS15630at 3232.979 kb on + strand, within ABID97_RS15630at 3232.979 kb on + strand, within ABID97_RS15630at 3232.980 kb on - strand, within ABID97_RS15630at 3232.980 kb on - strand, within ABID97_RS15630at 3232.980 kb on - strand, within ABID97_RS15630at 3233.018 kb on + strand, within ABID97_RS15630at 3233.018 kb on + strand, within ABID97_RS15630at 3233.019 kb on - strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.036 kb on + strand, within ABID97_RS15630at 3233.037 kb on - strand, within ABID97_RS15630at 3233.037 kb on - strand, within ABID97_RS15630at 3233.039 kb on + strand, within ABID97_RS15630at 3233.039 kb on + strand, within ABID97_RS15630at 3233.039 kb on + strand, within ABID97_RS15630at 3233.040 kb on - strand, within ABID97_RS15630at 3233.040 kb on - strand, within ABID97_RS15630at 3233.057 kb on + strand, within ABID97_RS15630at 3233.075 kb on + strand, within ABID97_RS15630at 3233.093 kb on + strand, within ABID97_RS15630at 3233.097 kb on - strand, within ABID97_RS15630at 3233.273 kb on + strandat 3233.274 kb on - strandat 3233.356 kb on + strandat 3233.720 kb on + strand, within ABID97_RS15635at 3233.720 kb on + strand, within ABID97_RS15635at 3233.721 kb on - strand, within ABID97_RS15635

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,230,008 - ABID97_RS15620 0.42 -0.1
3,230,247 + ABID97_RS15620 0.63 +0.0
3,230,248 - ABID97_RS15620 0.64 -0.8
3,230,248 - ABID97_RS15620 0.64 -0.3
3,230,584 - -1.3
3,232,730 + +0.3
3,232,730 + -0.4
3,232,820 + -0.5
3,232,820 + +0.1
3,232,820 + -1.1
3,232,820 + -0.1
3,232,953 - ABID97_RS15630 0.20 +0.6
3,232,956 - ABID97_RS15630 0.20 -0.6
3,232,956 - ABID97_RS15630 0.20 +2.5
3,232,967 + ABID97_RS15630 0.23 -0.6
3,232,979 + ABID97_RS15630 0.26 +1.2
3,232,979 + ABID97_RS15630 0.26 +0.4
3,232,979 + ABID97_RS15630 0.26 -0.4
3,232,980 - ABID97_RS15630 0.26 -0.7
3,232,980 - ABID97_RS15630 0.26 -0.2
3,232,980 - ABID97_RS15630 0.26 +0.2
3,233,018 + ABID97_RS15630 0.34 -0.5
3,233,018 + ABID97_RS15630 0.34 -0.3
3,233,019 - ABID97_RS15630 0.34 -1.2
3,233,036 + ABID97_RS15630 0.38 +0.5
3,233,036 + ABID97_RS15630 0.38 +0.0
3,233,036 + ABID97_RS15630 0.38 -1.3
3,233,036 + ABID97_RS15630 0.38 -0.7
3,233,036 + ABID97_RS15630 0.38 -1.1
3,233,036 + ABID97_RS15630 0.38 -0.1
3,233,036 + ABID97_RS15630 0.38 -0.5
3,233,036 + ABID97_RS15630 0.38 -0.2
3,233,037 - ABID97_RS15630 0.38 +0.2
3,233,037 - ABID97_RS15630 0.38 -1.0
3,233,039 + ABID97_RS15630 0.39 -0.4
3,233,039 + ABID97_RS15630 0.39 -0.8
3,233,039 + ABID97_RS15630 0.39 +1.2
3,233,040 - ABID97_RS15630 0.39 -0.6
3,233,040 - ABID97_RS15630 0.39 +0.1
3,233,057 + ABID97_RS15630 0.43 -0.7
3,233,075 + ABID97_RS15630 0.47 -0.7
3,233,093 + ABID97_RS15630 0.51 -0.3
3,233,097 - ABID97_RS15630 0.52 -0.7
3,233,273 + +0.4
3,233,274 - +0.1
3,233,356 + -0.0
3,233,720 + ABID97_RS15635 0.66 +0.7
3,233,720 + ABID97_RS15635 0.66 -0.4
3,233,721 - ABID97_RS15635 0.66 -0.4

Or see this region's nucleotide sequence