Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13615

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13610 and ABID97_RS13615 overlap by 4 nucleotidesABID97_RS13615 and ABID97_RS13620 overlap by 10 nucleotides ABID97_RS13610: ABID97_RS13610 - hydrogenase formation protein HypD, at 2,837,033 to 2,838,181 _RS13610 ABID97_RS13615: ABID97_RS13615 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,838,178 to 2,838,423 _RS13615 ABID97_RS13620: ABID97_RS13620 - carbamoyltransferase HypF, at 2,838,414 to 2,839,562 _RS13620 Position (kb) 2838 2839Strain fitness (log2 ratio) -2 -1 0 1at 2837.308 kb on - strand, within ABID97_RS13610at 2837.348 kb on + strand, within ABID97_RS13610at 2837.348 kb on + strand, within ABID97_RS13610at 2837.827 kb on - strand, within ABID97_RS13610at 2837.910 kb on + strand, within ABID97_RS13610at 2837.910 kb on + strand, within ABID97_RS13610at 2838.094 kb on - strandat 2838.174 kb on + strandat 2838.299 kb on + strand, within ABID97_RS13615at 2839.348 kb on + strand, within ABID97_RS13620

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,837,308 - ABID97_RS13610 0.24 -0.6
2,837,348 + ABID97_RS13610 0.27 -0.1
2,837,348 + ABID97_RS13610 0.27 +0.9
2,837,827 - ABID97_RS13610 0.69 +0.2
2,837,910 + ABID97_RS13610 0.76 +0.0
2,837,910 + ABID97_RS13610 0.76 -0.6
2,838,094 - -2.1
2,838,174 + +0.3
2,838,299 + ABID97_RS13615 0.49 -1.2
2,839,348 + ABID97_RS13620 0.81 -0.3

Or see this region's nucleotide sequence