Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13565

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13555 and ABID97_RS13560 overlap by 4 nucleotidesABID97_RS13560 and ABID97_RS13565 overlap by 4 nucleotidesABID97_RS13565 and ABID97_RS13570 are separated by 73 nucleotidesABID97_RS13570 and ABID97_RS13575 are separated by 115 nucleotides ABID97_RS13555: ABID97_RS13555 - branched-chain amino acid ABC transporter permease, at 2,825,117 to 2,826,079 _RS13555 ABID97_RS13560: ABID97_RS13560 - ATP-binding cassette domain-containing protein, at 2,826,076 to 2,826,837 _RS13560 ABID97_RS13565: ABID97_RS13565 - ABC transporter ATP-binding protein, at 2,826,834 to 2,827,550 _RS13565 ABID97_RS13570: ABID97_RS13570 - IclR family transcriptional regulator, at 2,827,624 to 2,828,337 _RS13570 ABID97_RS13575: ABID97_RS13575 - ATP-binding protein, at 2,828,453 to 2,829,793 _RS13575 Position (kb) 2826 2827 2828Strain fitness (log2 ratio) -2 -1 0 1at 2825.994 kb on + strandat 2826.425 kb on - strand, within ABID97_RS13560at 2826.817 kb on + strandat 2827.444 kb on - strand, within ABID97_RS13565at 2827.444 kb on - strand, within ABID97_RS13565at 2827.444 kb on - strand, within ABID97_RS13565at 2827.738 kb on + strand, within ABID97_RS13570at 2827.853 kb on - strand, within ABID97_RS13570at 2827.918 kb on + strand, within ABID97_RS13570at 2827.937 kb on - strand, within ABID97_RS13570at 2828.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,825,994 + +0.6
2,826,425 - ABID97_RS13560 0.46 +0.1
2,826,817 + -0.1
2,827,444 - ABID97_RS13565 0.85 -1.8
2,827,444 - ABID97_RS13565 0.85 -1.2
2,827,444 - ABID97_RS13565 0.85 -1.7
2,827,738 + ABID97_RS13570 0.16 +0.2
2,827,853 - ABID97_RS13570 0.32 +0.6
2,827,918 + ABID97_RS13570 0.41 +0.0
2,827,937 - ABID97_RS13570 0.44 -0.8
2,828,391 - +0.3

Or see this region's nucleotide sequence