Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13360

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13350 and ABID97_RS13355 are separated by 2 nucleotidesABID97_RS13355 and ABID97_RS13360 are separated by 11 nucleotidesABID97_RS13360 and ABID97_RS13365 are separated by 165 nucleotides ABID97_RS13350: ABID97_RS13350 - CmpA/NrtA family ABC transporter substrate-binding protein, at 2,779,823 to 2,781,292 _RS13350 ABID97_RS13355: ABID97_RS13355 - nitrate ABC transporter permease, at 2,781,295 to 2,782,146 _RS13355 ABID97_RS13360: ABID97_RS13360 - ABC transporter ATP-binding protein, at 2,782,158 to 2,783,000 _RS13360 ABID97_RS13365: ABID97_RS13365 - LysR family transcriptional regulator, at 2,783,166 to 2,784,107 _RS13365 Position (kb) 2782 2783 2784Strain fitness (log2 ratio) -1 0 1at 2781.738 kb on + strand, within ABID97_RS13355at 2782.857 kb on - strand, within ABID97_RS13360at 2783.228 kb on + strandat 2783.229 kb on - strandat 2783.477 kb on + strand, within ABID97_RS13365at 2783.545 kb on - strand, within ABID97_RS13365at 2783.683 kb on - strand, within ABID97_RS13365at 2783.704 kb on - strand, within ABID97_RS13365

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,781,738 + ABID97_RS13355 0.52 +0.1
2,782,857 - ABID97_RS13360 0.83 -1.5
2,783,228 + -1.0
2,783,229 - +0.4
2,783,477 + ABID97_RS13365 0.33 -0.0
2,783,545 - ABID97_RS13365 0.40 +1.6
2,783,683 - ABID97_RS13365 0.55 +1.2
2,783,704 - ABID97_RS13365 0.57 +1.3

Or see this region's nucleotide sequence