Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13350 and ABID97_RS13355 are separated by 2 nucleotides ABID97_RS13355 and ABID97_RS13360 are separated by 11 nucleotides ABID97_RS13360 and ABID97_RS13365 are separated by 165 nucleotides
ABID97_RS13350: ABID97_RS13350 - CmpA/NrtA family ABC transporter substrate-binding protein, at 2,779,823 to 2,781,292
_RS13350
ABID97_RS13355: ABID97_RS13355 - nitrate ABC transporter permease, at 2,781,295 to 2,782,146
_RS13355
ABID97_RS13360: ABID97_RS13360 - ABC transporter ATP-binding protein, at 2,782,158 to 2,783,000
_RS13360
ABID97_RS13365: ABID97_RS13365 - LysR family transcriptional regulator, at 2,783,166 to 2,784,107
_RS13365
Position (kb)
2782
2783
2784 Strain fitness (log2 ratio)
-1
0
1 at 2781.738 kb on + strand, within ABID97_RS13355 at 2782.857 kb on - strand, within ABID97_RS13360 at 2783.228 kb on + strand at 2783.229 kb on - strand at 2783.477 kb on + strand, within ABID97_RS13365 at 2783.545 kb on - strand, within ABID97_RS13365 at 2783.683 kb on - strand, within ABID97_RS13365 at 2783.704 kb on - strand, within ABID97_RS13365
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,781,738 + ABID97_RS13355 0.52 +0.1 2,782,857 - ABID97_RS13360 0.83 -1.5 2,783,228 + -1.0 2,783,229 - +0.4 2,783,477 + ABID97_RS13365 0.33 -0.0 2,783,545 - ABID97_RS13365 0.40 +1.6 2,783,683 - ABID97_RS13365 0.55 +1.2 2,783,704 - ABID97_RS13365 0.57 +1.3
Or see this region's nucleotide sequence