Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13265 and ABID97_RS13270 are separated by 162 nucleotides ABID97_RS13270 and ABID97_RS13275 are separated by 23 nucleotides ABID97_RS13275 and ABID97_RS13280 are separated by 13 nucleotides
ABID97_RS13265: ABID97_RS13265 - tripartite tricarboxylate transporter substrate binding protein, at 2,763,233 to 2,764,216
_RS13265
ABID97_RS13270: ABID97_RS13270 - TetR/AcrR family transcriptional regulator, at 2,764,379 to 2,765,044
_RS13270
ABID97_RS13275: ABID97_RS13275 - MDR family oxidoreductase, at 2,765,068 to 2,766,054
_RS13275
ABID97_RS13280: ABID97_RS13280 - thiamine pyrophosphate-dependent enzyme, at 2,766,068 to 2,767,708
_RS13280
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-1
0
1 at 2764.454 kb on - strand, within ABID97_RS13270 at 2764.559 kb on + strand, within ABID97_RS13270 at 2764.559 kb on + strand, within ABID97_RS13270 at 2764.604 kb on + strand, within ABID97_RS13270 at 2764.985 kb on + strand at 2764.985 kb on + strand at 2764.985 kb on + strand at 2765.068 kb on - strand at 2765.068 kb on - strand at 2765.191 kb on + strand, within ABID97_RS13275 at 2765.191 kb on + strand, within ABID97_RS13275 at 2765.191 kb on + strand, within ABID97_RS13275 at 2765.422 kb on - strand, within ABID97_RS13275 at 2765.584 kb on + strand, within ABID97_RS13275 at 2765.626 kb on + strand, within ABID97_RS13275 at 2765.753 kb on + strand, within ABID97_RS13275 at 2765.754 kb on - strand, within ABID97_RS13275 at 2765.954 kb on + strand, within ABID97_RS13275 at 2766.074 kb on + strand at 2766.074 kb on + strand at 2766.074 kb on + strand at 2766.785 kb on + strand, within ABID97_RS13280
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,764,454 - ABID97_RS13270 0.11 +1.4 2,764,559 + ABID97_RS13270 0.27 +0.6 2,764,559 + ABID97_RS13270 0.27 -0.8 2,764,604 + ABID97_RS13270 0.34 -0.2 2,764,985 + -0.6 2,764,985 + +0.1 2,764,985 + -0.6 2,765,068 - +0.3 2,765,068 - +1.3 2,765,191 + ABID97_RS13275 0.12 -0.4 2,765,191 + ABID97_RS13275 0.12 -0.3 2,765,191 + ABID97_RS13275 0.12 -0.2 2,765,422 - ABID97_RS13275 0.36 +0.7 2,765,584 + ABID97_RS13275 0.52 +0.4 2,765,626 + ABID97_RS13275 0.57 -0.4 2,765,753 + ABID97_RS13275 0.69 +1.0 2,765,754 - ABID97_RS13275 0.70 -1.0 2,765,954 + ABID97_RS13275 0.90 -0.7 2,766,074 + -0.8 2,766,074 + +0.2 2,766,074 + +1.0 2,766,785 + ABID97_RS13280 0.44 +0.2
Or see this region's nucleotide sequence