Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13275

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13265 and ABID97_RS13270 are separated by 162 nucleotidesABID97_RS13270 and ABID97_RS13275 are separated by 23 nucleotidesABID97_RS13275 and ABID97_RS13280 are separated by 13 nucleotides ABID97_RS13265: ABID97_RS13265 - tripartite tricarboxylate transporter substrate binding protein, at 2,763,233 to 2,764,216 _RS13265 ABID97_RS13270: ABID97_RS13270 - TetR/AcrR family transcriptional regulator, at 2,764,379 to 2,765,044 _RS13270 ABID97_RS13275: ABID97_RS13275 - MDR family oxidoreductase, at 2,765,068 to 2,766,054 _RS13275 ABID97_RS13280: ABID97_RS13280 - thiamine pyrophosphate-dependent enzyme, at 2,766,068 to 2,767,708 _RS13280 Position (kb) 2765 2766 2767Strain fitness (log2 ratio) -1 0 1at 2764.454 kb on - strand, within ABID97_RS13270at 2764.559 kb on + strand, within ABID97_RS13270at 2764.559 kb on + strand, within ABID97_RS13270at 2764.604 kb on + strand, within ABID97_RS13270at 2764.985 kb on + strandat 2764.985 kb on + strandat 2764.985 kb on + strandat 2765.068 kb on - strandat 2765.068 kb on - strandat 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275at 2765.422 kb on - strand, within ABID97_RS13275at 2765.584 kb on + strand, within ABID97_RS13275at 2765.626 kb on + strand, within ABID97_RS13275at 2765.753 kb on + strand, within ABID97_RS13275at 2765.754 kb on - strand, within ABID97_RS13275at 2765.954 kb on + strand, within ABID97_RS13275at 2766.074 kb on + strandat 2766.074 kb on + strandat 2766.074 kb on + strandat 2766.785 kb on + strand, within ABID97_RS13280

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,764,454 - ABID97_RS13270 0.11 +1.4
2,764,559 + ABID97_RS13270 0.27 +0.6
2,764,559 + ABID97_RS13270 0.27 -0.8
2,764,604 + ABID97_RS13270 0.34 -0.2
2,764,985 + -0.6
2,764,985 + +0.1
2,764,985 + -0.6
2,765,068 - +0.3
2,765,068 - +1.3
2,765,191 + ABID97_RS13275 0.12 -0.4
2,765,191 + ABID97_RS13275 0.12 -0.3
2,765,191 + ABID97_RS13275 0.12 -0.2
2,765,422 - ABID97_RS13275 0.36 +0.7
2,765,584 + ABID97_RS13275 0.52 +0.4
2,765,626 + ABID97_RS13275 0.57 -0.4
2,765,753 + ABID97_RS13275 0.69 +1.0
2,765,754 - ABID97_RS13275 0.70 -1.0
2,765,954 + ABID97_RS13275 0.90 -0.7
2,766,074 + -0.8
2,766,074 + +0.2
2,766,074 + +1.0
2,766,785 + ABID97_RS13280 0.44 +0.2

Or see this region's nucleotide sequence