Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13240 and ABID97_RS13245 are separated by 96 nucleotides ABID97_RS13245 and ABID97_RS13250 are separated by 40 nucleotides ABID97_RS13250 and ABID97_RS13255 overlap by 4 nucleotides
ABID97_RS13240: ABID97_RS13240 - PDR/VanB family oxidoreductase, at 2,759,044 to 2,759,994
_RS13240
ABID97_RS13245: ABID97_RS13245 - XRE family transcriptional regulator, at 2,760,091 to 2,760,621
_RS13245
ABID97_RS13250: ABID97_RS13250 - 3-oxoacid CoA-transferase subunit B, at 2,760,662 to 2,761,351
_RS13250
ABID97_RS13255: ABID97_RS13255 - 3-oxoacid CoA-transferase subunit A, at 2,761,348 to 2,762,010
_RS13255
Position (kb)
2760
2761 Strain fitness (log2 ratio)
-1
0
1
2 at 2759.209 kb on + strand, within ABID97_RS13240 at 2759.210 kb on + strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.246 kb on - strand, within ABID97_RS13240 at 2759.298 kb on - strand, within ABID97_RS13240 at 2759.542 kb on + strand, within ABID97_RS13240 at 2759.543 kb on - strand, within ABID97_RS13240 at 2759.992 kb on + strand at 2760.109 kb on + strand at 2760.109 kb on - strand at 2760.175 kb on + strand, within ABID97_RS13245 at 2761.245 kb on + strand, within ABID97_RS13250 at 2761.508 kb on + strand, within ABID97_RS13255
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,759,209 + ABID97_RS13240 0.17 +0.0 2,759,210 + ABID97_RS13240 0.17 -0.8 2,759,246 - ABID97_RS13240 0.21 -0.6 2,759,246 - ABID97_RS13240 0.21 +1.9 2,759,246 - ABID97_RS13240 0.21 -0.3 2,759,246 - ABID97_RS13240 0.21 -0.3 2,759,246 - ABID97_RS13240 0.21 -1.0 2,759,246 - ABID97_RS13240 0.21 +1.2 2,759,298 - ABID97_RS13240 0.27 -0.3 2,759,542 + ABID97_RS13240 0.52 +1.9 2,759,543 - ABID97_RS13240 0.52 -0.1 2,759,992 + -0.1 2,760,109 + +0.2 2,760,109 - -0.5 2,760,175 + ABID97_RS13245 0.16 -1.0 2,761,245 + ABID97_RS13250 0.84 -0.6 2,761,508 + ABID97_RS13255 0.24 +0.7
Or see this region's nucleotide sequence