Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13245

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13240 and ABID97_RS13245 are separated by 96 nucleotidesABID97_RS13245 and ABID97_RS13250 are separated by 40 nucleotidesABID97_RS13250 and ABID97_RS13255 overlap by 4 nucleotides ABID97_RS13240: ABID97_RS13240 - PDR/VanB family oxidoreductase, at 2,759,044 to 2,759,994 _RS13240 ABID97_RS13245: ABID97_RS13245 - XRE family transcriptional regulator, at 2,760,091 to 2,760,621 _RS13245 ABID97_RS13250: ABID97_RS13250 - 3-oxoacid CoA-transferase subunit B, at 2,760,662 to 2,761,351 _RS13250 ABID97_RS13255: ABID97_RS13255 - 3-oxoacid CoA-transferase subunit A, at 2,761,348 to 2,762,010 _RS13255 Position (kb) 2760 2761Strain fitness (log2 ratio) -1 0 1 2at 2759.209 kb on + strand, within ABID97_RS13240at 2759.210 kb on + strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.246 kb on - strand, within ABID97_RS13240at 2759.298 kb on - strand, within ABID97_RS13240at 2759.542 kb on + strand, within ABID97_RS13240at 2759.543 kb on - strand, within ABID97_RS13240at 2759.992 kb on + strandat 2760.109 kb on + strandat 2760.109 kb on - strandat 2760.175 kb on + strand, within ABID97_RS13245at 2761.245 kb on + strand, within ABID97_RS13250at 2761.508 kb on + strand, within ABID97_RS13255

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,759,209 + ABID97_RS13240 0.17 +0.0
2,759,210 + ABID97_RS13240 0.17 -0.8
2,759,246 - ABID97_RS13240 0.21 -0.6
2,759,246 - ABID97_RS13240 0.21 +1.9
2,759,246 - ABID97_RS13240 0.21 -0.3
2,759,246 - ABID97_RS13240 0.21 -0.3
2,759,246 - ABID97_RS13240 0.21 -1.0
2,759,246 - ABID97_RS13240 0.21 +1.2
2,759,298 - ABID97_RS13240 0.27 -0.3
2,759,542 + ABID97_RS13240 0.52 +1.9
2,759,543 - ABID97_RS13240 0.52 -0.1
2,759,992 + -0.1
2,760,109 + +0.2
2,760,109 - -0.5
2,760,175 + ABID97_RS13245 0.16 -1.0
2,761,245 + ABID97_RS13250 0.84 -0.6
2,761,508 + ABID97_RS13255 0.24 +0.7

Or see this region's nucleotide sequence