Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12895

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS12890 and ABID97_RS12895 are separated by 43 nucleotidesABID97_RS12895 and ABID97_RS12900 are separated by 41 nucleotides ABID97_RS12890: ABID97_RS12890 - phosphoglycerate kinase, at 2,671,468 to 2,672,649 _RS12890 ABID97_RS12895: ABID97_RS12895 - class II fructose-bisphosphate aldolase, at 2,672,693 to 2,673,706 _RS12895 ABID97_RS12900: ABID97_RS12900 - type VI secretion system protein TssA, at 2,673,748 to 2,675,316 _RS12900 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -1 0 1at 2673.050 kb on + strand, within ABID97_RS12895at 2673.050 kb on + strand, within ABID97_RS12895at 2673.458 kb on + strand, within ABID97_RS12895at 2673.704 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
2,673,050 + ABID97_RS12895 0.35 -0.5
2,673,050 + ABID97_RS12895 0.35 -0.2
2,673,458 + ABID97_RS12895 0.75 +1.0
2,673,704 + +0.4

Or see this region's nucleotide sequence