Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11620

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11610 and ABID97_RS11615 are separated by 24 nucleotidesABID97_RS11615 and ABID97_RS11620 overlap by 4 nucleotidesABID97_RS11620 and ABID97_RS11625 are separated by 14 nucleotides ABID97_RS11610: ABID97_RS11610 - NADP-dependent oxidoreductase, at 2,398,618 to 2,399,664 _RS11610 ABID97_RS11615: ABID97_RS11615 - NAD(P)H-dependent oxidoreductase, at 2,399,689 to 2,400,267 _RS11615 ABID97_RS11620: ABID97_RS11620 - nitronate monooxygenase, at 2,400,264 to 2,401,196 _RS11620 ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410 _RS11625 Position (kb) 2400 2401 2402Strain fitness (log2 ratio) -1 0 1at 2399.286 kb on - strand, within ABID97_RS11610at 2399.286 kb on - strand, within ABID97_RS11610at 2399.520 kb on + strand, within ABID97_RS11610at 2400.569 kb on - strand, within ABID97_RS11620at 2400.906 kb on - strand, within ABID97_RS11620at 2400.906 kb on - strand, within ABID97_RS11620at 2401.266 kb on + strandat 2401.328 kb on + strandat 2401.372 kb on - strand, within ABID97_RS11625at 2401.839 kb on - strand, within ABID97_RS11625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
2,399,286 - ABID97_RS11610 0.64 -0.8
2,399,286 - ABID97_RS11610 0.64 +1.4
2,399,520 + ABID97_RS11610 0.86 -0.1
2,400,569 - ABID97_RS11620 0.33 -1.1
2,400,906 - ABID97_RS11620 0.69 -0.6
2,400,906 - ABID97_RS11620 0.69 -0.4
2,401,266 + -0.1
2,401,328 + +0.2
2,401,372 - ABID97_RS11625 0.13 -0.3
2,401,839 - ABID97_RS11625 0.52 -0.1

Or see this region's nucleotide sequence