Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11310

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11300 and ABID97_RS11305 are separated by 168 nucleotidesABID97_RS11305 and ABID97_RS11310 overlap by 29 nucleotidesABID97_RS11310 and ABID97_RS11315 are separated by 210 nucleotides ABID97_RS11300: ABID97_RS11300 - hypothetical protein, at 2,333,440 to 2,334,390 _RS11300 ABID97_RS11305: ABID97_RS11305 - hypothetical protein, at 2,334,559 to 2,334,840 _RS11305 ABID97_RS11310: ABID97_RS11310 - LysR family transcriptional regulator, at 2,334,812 to 2,335,723 _RS11310 ABID97_RS11315: ABID97_RS11315 - ABC transporter substrate-binding protein, at 2,335,934 to 2,336,935 _RS11315 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -1 0 1at 2334.281 kb on - strand, within ABID97_RS11300at 2334.511 kb on + strandat 2335.944 kb on - strandat 2335.944 kb on - strandat 2336.159 kb on + strand, within ABID97_RS11315at 2336.180 kb on + strand, within ABID97_RS11315at 2336.270 kb on + strand, within ABID97_RS11315

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,334,281 - ABID97_RS11300 0.88 -0.6
2,334,511 + -0.4
2,335,944 - -0.0
2,335,944 - +0.6
2,336,159 + ABID97_RS11315 0.22 -0.2
2,336,180 + ABID97_RS11315 0.25 +0.1
2,336,270 + ABID97_RS11315 0.34 -1.0

Or see this region's nucleotide sequence