Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08900 and ABID97_RS08905 overlap by 4 nucleotides ABID97_RS08905 and ABID97_RS08910 are separated by 82 nucleotides ABID97_RS08910 and ABID97_RS08915 overlap by 11 nucleotides
ABID97_RS08900: ABID97_RS08900 - branched-chain amino acid ABC transporter permease, at 1,864,661 to 1,865,716
_RS08900
ABID97_RS08905: ABID97_RS08905 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 1,865,713 to 1,867,512
_RS08905
ABID97_RS08910: ABID97_RS08910 - ABC transporter ATP-binding protein, at 1,867,595 to 1,868,326
_RS08910
ABID97_RS08915: ABID97_RS08915 - ATP-dependent acyl-CoA ligase, at 1,868,316 to 1,869,917
_RS08915
Position (kb)
1865
1866
1867
1868 Strain fitness (log2 ratio)
-1
0
1 at 1865.412 kb on - strand, within ABID97_RS08900 at 1865.475 kb on - strand, within ABID97_RS08900 at 1865.475 kb on - strand, within ABID97_RS08900 at 1866.199 kb on + strand, within ABID97_RS08905 at 1866.200 kb on - strand, within ABID97_RS08905 at 1866.202 kb on + strand, within ABID97_RS08905 at 1866.203 kb on - strand, within ABID97_RS08905 at 1866.704 kb on - strand, within ABID97_RS08905 at 1867.508 kb on + strand at 1867.904 kb on + strand, within ABID97_RS08910 at 1867.956 kb on - strand, within ABID97_RS08910 at 1868.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,865,412 - ABID97_RS08900 0.71 +0.2 1,865,475 - ABID97_RS08900 0.77 -1.2 1,865,475 - ABID97_RS08900 0.77 +0.2 1,866,199 + ABID97_RS08905 0.27 -0.0 1,866,200 - ABID97_RS08905 0.27 +0.1 1,866,202 + ABID97_RS08905 0.27 +0.5 1,866,203 - ABID97_RS08905 0.27 -0.2 1,866,704 - ABID97_RS08905 0.55 +0.5 1,867,508 + +0.1 1,867,904 + ABID97_RS08910 0.42 -0.0 1,867,956 - ABID97_RS08910 0.49 -0.5 1,868,295 - -0.1
Or see this region's nucleotide sequence