Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08390 and ABID97_RS08395 are separated by 7 nucleotides ABID97_RS08395 and ABID97_RS08400 overlap by 4 nucleotides ABID97_RS08400 and ABID97_RS08405 are separated by 2 nucleotides
ABID97_RS08390: ABID97_RS08390 - beta-N-acetylhexosaminidase, at 1,762,000 to 1,763,106
_RS08390
ABID97_RS08395: ABID97_RS08395 - M48 family metallopeptidase, at 1,763,114 to 1,763,656
_RS08395
ABID97_RS08400: ABID97_RS08400 - Hsp70 family protein, at 1,763,653 to 1,764,915
_RS08400
ABID97_RS08405: ABID97_RS08405 - lysine--tRNA ligase, at 1,764,918 to 1,766,480
_RS08405
Position (kb) 1763
1764
1765 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1762.672 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1763.044 kb on + strand at 1763.045 kb on - strand at 1763.093 kb on - strand at 1763.093 kb on - strand at 1763.093 kb on - strand at 1763.115 kb on + strand at 1763.116 kb on - strand at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.257 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.520 kb on + strand, within ABID97_RS08395 at 1763.520 kb on + strand, within ABID97_RS08395 at 1763.521 kb on - strand, within ABID97_RS08395 at 1763.521 kb on - strand, within ABID97_RS08395 at 1763.649 kb on + strand at 1763.650 kb on - strand at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.790 kb on - strand, within ABID97_RS08400 at 1763.790 kb on - strand, within ABID97_RS08400 at 1764.065 kb on + strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400 at 1764.110 kb on + strand, within ABID97_RS08400 at 1764.111 kb on - strand, within ABID97_RS08400 at 1764.111 kb on - strand, within ABID97_RS08400 at 1764.401 kb on + strand, within ABID97_RS08400 at 1764.641 kb on + strand, within ABID97_RS08400 at 1764.725 kb on + strand, within ABID97_RS08400 at 1764.726 kb on - strand, within ABID97_RS08400
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,762,672 + ABID97_RS08390 0.61 -1.8 1,762,819 + ABID97_RS08390 0.74 -1.3 1,762,819 + ABID97_RS08390 0.74 +0.3 1,762,819 + ABID97_RS08390 0.74 -1.3 1,762,819 + ABID97_RS08390 0.74 +1.4 1,762,820 - ABID97_RS08390 0.74 +0.1 1,762,820 - ABID97_RS08390 0.74 -0.9 1,762,820 - ABID97_RS08390 0.74 -0.1 1,762,820 - ABID97_RS08390 0.74 -1.3 1,763,044 + +0.3 1,763,045 - -2.9 1,763,093 - +0.1 1,763,093 - +0.9 1,763,093 - -0.4 1,763,115 + +0.4 1,763,116 - +0.0 1,763,256 + ABID97_RS08395 0.26 -0.1 1,763,256 + ABID97_RS08395 0.26 +1.2 1,763,256 + ABID97_RS08395 0.26 +0.3 1,763,256 + ABID97_RS08395 0.26 -0.1 1,763,257 - ABID97_RS08395 0.26 +0.1 1,763,515 - ABID97_RS08395 0.74 +0.1 1,763,515 - ABID97_RS08395 0.74 +0.3 1,763,515 - ABID97_RS08395 0.74 +1.2 1,763,520 + ABID97_RS08395 0.75 +1.4 1,763,520 + ABID97_RS08395 0.75 -0.7 1,763,521 - ABID97_RS08395 0.75 -0.6 1,763,521 - ABID97_RS08395 0.75 -0.1 1,763,649 + -0.6 1,763,650 - +1.1 1,763,789 + ABID97_RS08400 0.11 -0.2 1,763,789 + ABID97_RS08400 0.11 -1.6 1,763,789 + ABID97_RS08400 0.11 +0.5 1,763,789 + ABID97_RS08400 0.11 +0.0 1,763,789 + ABID97_RS08400 0.11 -0.4 1,763,790 - ABID97_RS08400 0.11 +0.6 1,763,790 - ABID97_RS08400 0.11 +0.2 1,764,065 + ABID97_RS08400 0.33 -0.4 1,764,066 - ABID97_RS08400 0.33 +0.3 1,764,066 - ABID97_RS08400 0.33 +0.7 1,764,066 - ABID97_RS08400 0.33 +0.9 1,764,110 + ABID97_RS08400 0.36 +0.5 1,764,111 - ABID97_RS08400 0.36 +0.2 1,764,111 - ABID97_RS08400 0.36 +0.1 1,764,401 + ABID97_RS08400 0.59 +1.1 1,764,641 + ABID97_RS08400 0.78 +0.6 1,764,725 + ABID97_RS08400 0.85 +0.4 1,764,726 - ABID97_RS08400 0.85 +0.4
Or see this region's nucleotide sequence