Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08090

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08075 and ABID97_RS08080 are separated by 29 nucleotidesABID97_RS08080 and ABID97_RS08085 are separated by 12 nucleotidesABID97_RS08085 and ABID97_RS08090 are separated by 28 nucleotidesABID97_RS08090 and ABID97_RS08095 overlap by 8 nucleotidesABID97_RS08095 and ABID97_RS08100 overlap by 4 nucleotides ABID97_RS08075: ABID97_RS08075 - LysE family translocator, at 1,695,568 to 1,696,194 _RS08075 ABID97_RS08080: ABID97_RS08080 - DUF2277 domain-containing protein, at 1,696,224 to 1,696,493 _RS08080 ABID97_RS08085: ABID97_RS08085 - GNAT family N-acetyltransferase, at 1,696,506 to 1,696,931 _RS08085 ABID97_RS08090: ABID97_RS08090 - tRNA 2-selenouridine(34) synthase MnmH, at 1,696,960 to 1,698,033 _RS08090 ABID97_RS08095: ABID97_RS08095 - phosphonate ABC transporter, permease protein PhnE, at 1,698,026 to 1,698,829 _RS08095 ABID97_RS08100: ABID97_RS08100 - ABC transporter permease, at 1,698,826 to 1,699,668 _RS08100 Position (kb) 1696 1697 1698 1699Strain fitness (log2 ratio) -2 -1 0 1 2at 1696.106 kb on + strand, within ABID97_RS08075at 1696.106 kb on + strand, within ABID97_RS08075at 1696.106 kb on + strand, within ABID97_RS08075at 1696.107 kb on - strand, within ABID97_RS08075at 1696.468 kb on + strandat 1696.468 kb on + strandat 1696.469 kb on - strandat 1696.729 kb on + strand, within ABID97_RS08085at 1696.729 kb on + strand, within ABID97_RS08085at 1696.729 kb on + strand, within ABID97_RS08085at 1696.729 kb on + strand, within ABID97_RS08085at 1696.730 kb on - strand, within ABID97_RS08085at 1696.730 kb on - strand, within ABID97_RS08085at 1696.730 kb on - strand, within ABID97_RS08085at 1696.871 kb on - strand, within ABID97_RS08085at 1696.871 kb on - strand, within ABID97_RS08085at 1697.243 kb on + strand, within ABID97_RS08090at 1697.243 kb on + strand, within ABID97_RS08090at 1697.243 kb on + strand, within ABID97_RS08090at 1697.249 kb on + strand, within ABID97_RS08090at 1697.250 kb on - strand, within ABID97_RS08090at 1697.264 kb on + strand, within ABID97_RS08090at 1697.265 kb on - strand, within ABID97_RS08090at 1697.742 kb on - strand, within ABID97_RS08090at 1697.742 kb on - strand, within ABID97_RS08090at 1697.861 kb on + strand, within ABID97_RS08090at 1697.862 kb on - strand, within ABID97_RS08090at 1697.862 kb on - strand, within ABID97_RS08090at 1697.862 kb on - strand, within ABID97_RS08090at 1698.153 kb on + strand, within ABID97_RS08095at 1698.153 kb on + strand, within ABID97_RS08095at 1698.229 kb on - strand, within ABID97_RS08095at 1698.237 kb on + strand, within ABID97_RS08095at 1698.238 kb on - strand, within ABID97_RS08095at 1699.025 kb on + strand, within ABID97_RS08100

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,696,106 + ABID97_RS08075 0.86 +0.2
1,696,106 + ABID97_RS08075 0.86 -0.4
1,696,106 + ABID97_RS08075 0.86 -0.0
1,696,107 - ABID97_RS08075 0.86 -0.3
1,696,468 + +0.3
1,696,468 + +1.8
1,696,469 - -1.1
1,696,729 + ABID97_RS08085 0.52 -1.5
1,696,729 + ABID97_RS08085 0.52 +2.6
1,696,729 + ABID97_RS08085 0.52 -0.4
1,696,729 + ABID97_RS08085 0.52 +0.2
1,696,730 - ABID97_RS08085 0.53 +1.1
1,696,730 - ABID97_RS08085 0.53 -1.0
1,696,730 - ABID97_RS08085 0.53 -0.1
1,696,871 - ABID97_RS08085 0.86 +0.5
1,696,871 - ABID97_RS08085 0.86 -0.2
1,697,243 + ABID97_RS08090 0.26 -1.2
1,697,243 + ABID97_RS08090 0.26 +0.2
1,697,243 + ABID97_RS08090 0.26 -1.3
1,697,249 + ABID97_RS08090 0.27 -0.5
1,697,250 - ABID97_RS08090 0.27 -0.3
1,697,264 + ABID97_RS08090 0.28 +1.0
1,697,265 - ABID97_RS08090 0.28 -1.3
1,697,742 - ABID97_RS08090 0.73 -0.5
1,697,742 - ABID97_RS08090 0.73 +0.3
1,697,861 + ABID97_RS08090 0.84 -0.1
1,697,862 - ABID97_RS08090 0.84 -0.0
1,697,862 - ABID97_RS08090 0.84 -0.1
1,697,862 - ABID97_RS08090 0.84 -0.5
1,698,153 + ABID97_RS08095 0.16 -1.9
1,698,153 + ABID97_RS08095 0.16 +0.4
1,698,229 - ABID97_RS08095 0.25 -1.0
1,698,237 + ABID97_RS08095 0.26 -1.4
1,698,238 - ABID97_RS08095 0.26 -1.9
1,699,025 + ABID97_RS08100 0.24 +0.4

Or see this region's nucleotide sequence