Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07975

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07965 and ABID97_RS07970 are separated by 190 nucleotidesABID97_RS07970 and ABID97_RS07975 overlap by 55 nucleotidesABID97_RS07975 and ABID97_RS07980 are separated by 119 nucleotides ABID97_RS07965: ABID97_RS07965 - DUF3606 domain-containing protein, at 1,674,892 to 1,675,071 _RS07965 ABID97_RS07970: ABID97_RS07970 - hypothetical protein, at 1,675,262 to 1,675,939 _RS07970 ABID97_RS07975: ABID97_RS07975 - DNA topoisomerase IB, at 1,675,885 to 1,677,171 _RS07975 ABID97_RS07980: ABID97_RS07980 - purine nucleoside permease, at 1,677,291 to 1,678,358 _RS07980 Position (kb) 1675 1676 1677 1678Strain fitness (log2 ratio) -2 -1 0 1 2at 1674.967 kb on + strand, within ABID97_RS07965at 1675.099 kb on - strandat 1675.099 kb on - strandat 1675.133 kb on + strandat 1675.133 kb on + strandat 1675.677 kb on - strand, within ABID97_RS07970at 1675.700 kb on + strand, within ABID97_RS07970at 1675.701 kb on - strand, within ABID97_RS07970at 1675.701 kb on - strand, within ABID97_RS07970at 1675.886 kb on + strandat 1676.210 kb on + strand, within ABID97_RS07975at 1676.210 kb on + strand, within ABID97_RS07975at 1676.210 kb on + strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.211 kb on - strand, within ABID97_RS07975at 1676.282 kb on + strand, within ABID97_RS07975at 1676.283 kb on - strand, within ABID97_RS07975at 1676.468 kb on + strand, within ABID97_RS07975at 1676.658 kb on - strand, within ABID97_RS07975at 1676.873 kb on + strand, within ABID97_RS07975at 1676.952 kb on - strand, within ABID97_RS07975at 1676.952 kb on - strand, within ABID97_RS07975at 1677.086 kb on + strandat 1677.087 kb on - strandat 1677.516 kb on + strand, within ABID97_RS07980at 1677.516 kb on + strand, within ABID97_RS07980at 1677.576 kb on + strand, within ABID97_RS07980at 1677.688 kb on - strand, within ABID97_RS07980at 1677.688 kb on - strand, within ABID97_RS07980at 1677.690 kb on + strand, within ABID97_RS07980at 1677.691 kb on - strand, within ABID97_RS07980at 1677.691 kb on - strand, within ABID97_RS07980at 1677.771 kb on + strand, within ABID97_RS07980at 1677.771 kb on + strand, within ABID97_RS07980at 1677.844 kb on - strand, within ABID97_RS07980at 1678.059 kb on + strand, within ABID97_RS07980at 1678.059 kb on + strand, within ABID97_RS07980at 1678.059 kb on + strand, within ABID97_RS07980at 1678.060 kb on - strand, within ABID97_RS07980at 1678.089 kb on + strand, within ABID97_RS07980at 1678.089 kb on + strand, within ABID97_RS07980

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,674,967 + ABID97_RS07965 0.42 +0.2
1,675,099 - -0.6
1,675,099 - -0.7
1,675,133 + -0.5
1,675,133 + -0.5
1,675,677 - ABID97_RS07970 0.61 +0.4
1,675,700 + ABID97_RS07970 0.65 +0.1
1,675,701 - ABID97_RS07970 0.65 -0.6
1,675,701 - ABID97_RS07970 0.65 +0.2
1,675,886 + +0.9
1,676,210 + ABID97_RS07975 0.25 -0.1
1,676,210 + ABID97_RS07975 0.25 +0.9
1,676,210 + ABID97_RS07975 0.25 -0.4
1,676,211 - ABID97_RS07975 0.25 +0.2
1,676,211 - ABID97_RS07975 0.25 +1.8
1,676,211 - ABID97_RS07975 0.25 +0.2
1,676,211 - ABID97_RS07975 0.25 -0.4
1,676,211 - ABID97_RS07975 0.25 -0.7
1,676,211 - ABID97_RS07975 0.25 +0.2
1,676,282 + ABID97_RS07975 0.31 -0.7
1,676,283 - ABID97_RS07975 0.31 -0.7
1,676,468 + ABID97_RS07975 0.45 +0.7
1,676,658 - ABID97_RS07975 0.60 +0.1
1,676,873 + ABID97_RS07975 0.77 -0.4
1,676,952 - ABID97_RS07975 0.83 -0.6
1,676,952 - ABID97_RS07975 0.83 -1.9
1,677,086 + -0.2
1,677,087 - +0.9
1,677,516 + ABID97_RS07980 0.21 +0.8
1,677,516 + ABID97_RS07980 0.21 -2.5
1,677,576 + ABID97_RS07980 0.27 -0.3
1,677,688 - ABID97_RS07980 0.37 -0.6
1,677,688 - ABID97_RS07980 0.37 +0.4
1,677,690 + ABID97_RS07980 0.37 -0.7
1,677,691 - ABID97_RS07980 0.37 -1.4
1,677,691 - ABID97_RS07980 0.37 -0.0
1,677,771 + ABID97_RS07980 0.45 +0.3
1,677,771 + ABID97_RS07980 0.45 -1.0
1,677,844 - ABID97_RS07980 0.52 +0.5
1,678,059 + ABID97_RS07980 0.72 -0.0
1,678,059 + ABID97_RS07980 0.72 -0.6
1,678,059 + ABID97_RS07980 0.72 -1.6
1,678,060 - ABID97_RS07980 0.72 -0.4
1,678,089 + ABID97_RS07980 0.75 -0.2
1,678,089 + ABID97_RS07980 0.75 +2.0

Or see this region's nucleotide sequence