Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05840 and ABID97_RS05845 are separated by 129 nucleotides ABID97_RS05845 and ABID97_RS05850 are separated by 126 nucleotides ABID97_RS05850 and ABID97_RS05855 are separated by 66 nucleotides
ABID97_RS05840: ABID97_RS05840 - LysR substrate-binding domain-containing protein, at 1,234,082 to 1,234,966
_RS05840
ABID97_RS05845: ABID97_RS05845 - SDR family oxidoreductase, at 1,235,096 to 1,235,854
_RS05845
ABID97_RS05850: ABID97_RS05850 - TetR/AcrR family transcriptional regulator, at 1,235,981 to 1,236,679
_RS05850
ABID97_RS05855: ABID97_RS05855 - acyl-CoA dehydrogenase C-terminal domain-containing protein, at 1,236,746 to 1,238,542
_RS05855
Position (kb) 1235
1236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 1234.110 kb on + strand at 1234.111 kb on - strand at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.656 kb on + strand, within ABID97_RS05840 at 1234.657 kb on - strand, within ABID97_RS05840 at 1234.657 kb on - strand, within ABID97_RS05840 at 1235.736 kb on - strand, within ABID97_RS05845 at 1235.736 kb on - strand, within ABID97_RS05845 at 1235.783 kb on + strand at 1235.784 kb on - strand at 1236.124 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.330 kb on - strand, within ABID97_RS05850 at 1236.521 kb on + strand, within ABID97_RS05850 at 1236.521 kb on + strand, within ABID97_RS05850 at 1236.522 kb on - strand, within ABID97_RS05850 at 1236.751 kb on + strand at 1236.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,234,110 + -0.2 1,234,111 - -0.2 1,234,656 + ABID97_RS05840 0.65 -0.3 1,234,656 + ABID97_RS05840 0.65 +1.1 1,234,656 + ABID97_RS05840 0.65 -0.3 1,234,656 + ABID97_RS05840 0.65 +0.1 1,234,656 + ABID97_RS05840 0.65 +0.4 1,234,657 - ABID97_RS05840 0.65 -0.8 1,234,657 - ABID97_RS05840 0.65 -2.9 1,235,736 - ABID97_RS05845 0.84 +1.4 1,235,736 - ABID97_RS05845 0.84 -1.3 1,235,783 + -0.4 1,235,784 - +0.0 1,236,124 + ABID97_RS05850 0.20 +6.8 1,236,329 + ABID97_RS05850 0.50 +8.3 1,236,329 + ABID97_RS05850 0.50 +8.1 1,236,329 + ABID97_RS05850 0.50 +8.0 1,236,330 - ABID97_RS05850 0.50 +7.8 1,236,521 + ABID97_RS05850 0.77 +7.6 1,236,521 + ABID97_RS05850 0.77 +8.0 1,236,522 - ABID97_RS05850 0.77 +7.4 1,236,751 + +0.6 1,236,755 + -0.0
Or see this region's nucleotide sequence