Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05025 and ABID97_RS05030 are separated by 27 nucleotides ABID97_RS05030 and ABID97_RS05035 are separated by 22 nucleotides ABID97_RS05035 and ABID97_RS05040 overlap by 8 nucleotides
ABID97_RS05025: ABID97_RS05025 - caspase family protein, at 1,057,925 to 1,059,940
_RS05025
ABID97_RS05030: ABID97_RS05030 - hypothetical protein, at 1,059,968 to 1,060,525
_RS05030
ABID97_RS05035: ABID97_RS05035 - type VI secretion system accessory protein TagJ, at 1,060,548 to 1,061,390
_RS05035
ABID97_RS05040: ABID97_RS05040 - type VI secretion system baseplate subunit TssE, at 1,061,383 to 1,061,895
_RS05040
Position (kb) 1059
1060
1061 Strain fitness (log2 ratio) -1
0
1 at 1059.939 kb on - strand at 1059.980 kb on + strand at 1060.151 kb on + strand, within ABID97_RS05030 at 1060.152 kb on - strand, within ABID97_RS05030 at 1060.206 kb on - strand, within ABID97_RS05030 at 1060.206 kb on - strand, within ABID97_RS05030 at 1061.037 kb on + strand, within ABID97_RS05035 at 1061.038 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,059,939 - -0.8 1,059,980 + +0.2 1,060,151 + ABID97_RS05030 0.33 +0.2 1,060,152 - ABID97_RS05030 0.33 +0.5 1,060,206 - ABID97_RS05030 0.43 +0.6 1,060,206 - ABID97_RS05030 0.43 -0.1 1,061,037 + ABID97_RS05035 0.58 -0.0 1,061,038 - ABID97_RS05035 0.58 +0.3 1,061,041 - ABID97_RS05035 0.58 -0.2 1,061,041 - ABID97_RS05035 0.58 -0.6 1,061,041 - ABID97_RS05035 0.58 +0.8
Or see this region's nucleotide sequence