Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05020

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05010 and ABID97_RS05015 are separated by 33 nucleotidesABID97_RS05015 and ABID97_RS05020 are separated by 28 nucleotidesABID97_RS05020 and ABID97_RS05025 are separated by 134 nucleotides ABID97_RS05010: ABID97_RS05010 - MltA domain-containing protein, at 1,054,238 to 1,055,839 _RS05010 ABID97_RS05015: ABID97_RS05015 - hypothetical protein, at 1,055,873 to 1,056,622 _RS05015 ABID97_RS05020: ABID97_RS05020 - hypothetical protein, at 1,056,651 to 1,057,790 _RS05020 ABID97_RS05025: ABID97_RS05025 - caspase family protein, at 1,057,925 to 1,059,940 _RS05025 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -1 0 1 2at 1055.838 kb on - strandat 1055.966 kb on + strand, within ABID97_RS05015at 1055.967 kb on - strand, within ABID97_RS05015at 1055.967 kb on - strand, within ABID97_RS05015at 1056.059 kb on + strand, within ABID97_RS05015at 1056.440 kb on + strand, within ABID97_RS05015at 1056.441 kb on - strand, within ABID97_RS05015at 1056.628 kb on + strandat 1056.629 kb on - strandat 1057.294 kb on - strand, within ABID97_RS05020at 1057.305 kb on + strand, within ABID97_RS05020at 1058.225 kb on + strand, within ABID97_RS05025at 1058.226 kb on - strand, within ABID97_RS05025at 1058.271 kb on - strand, within ABID97_RS05025

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,055,838 - -0.3
1,055,966 + ABID97_RS05015 0.12 +0.5
1,055,967 - ABID97_RS05015 0.13 +0.2
1,055,967 - ABID97_RS05015 0.13 +2.0
1,056,059 + ABID97_RS05015 0.25 -0.1
1,056,440 + ABID97_RS05015 0.76 +0.6
1,056,441 - ABID97_RS05015 0.76 +0.1
1,056,628 + +0.2
1,056,629 - +0.0
1,057,294 - ABID97_RS05020 0.56 +0.5
1,057,305 + ABID97_RS05020 0.57 +0.5
1,058,225 + ABID97_RS05025 0.15 -0.2
1,058,226 - ABID97_RS05025 0.15 +0.3
1,058,271 - ABID97_RS05025 0.17 -0.2

Or see this region's nucleotide sequence