Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04705 and ABID97_RS04710 are separated by 47 nucleotides ABID97_RS04710 and ABID97_RS04715 are separated by 61 nucleotides ABID97_RS04715 and ABID97_RS04720 are separated by 103 nucleotides
ABID97_RS04705: ABID97_RS04705 - MFS transporter, at 979,465 to 980,691
_RS04705
ABID97_RS04710: ABID97_RS04710 - malate synthase G, at 980,739 to 982,913
_RS04710
ABID97_RS04715: ABID97_RS04715 - haloacid dehalogenase type II, at 982,975 to 983,652
_RS04715
ABID97_RS04720: ABID97_RS04720 - IclR family transcriptional regulator, at 983,756 to 984,496
_RS04720
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 980.022 kb on - strand, within ABID97_RS04705 at 980.791 kb on + strand at 980.842 kb on + strand at 980.881 kb on + strand at 980.881 kb on + strand at 981.095 kb on - strand, within ABID97_RS04710 at 981.095 kb on - strand, within ABID97_RS04710 at 981.269 kb on - strand, within ABID97_RS04710 at 981.751 kb on + strand, within ABID97_RS04710 at 981.751 kb on + strand, within ABID97_RS04710 at 981.752 kb on - strand, within ABID97_RS04710 at 981.752 kb on - strand, within ABID97_RS04710 at 981.752 kb on - strand, within ABID97_RS04710 at 981.752 kb on - strand, within ABID97_RS04710 at 981.860 kb on - strand, within ABID97_RS04710 at 981.956 kb on - strand, within ABID97_RS04710 at 982.337 kb on - strand, within ABID97_RS04710 at 982.436 kb on - strand, within ABID97_RS04710 at 982.485 kb on + strand, within ABID97_RS04710 at 982.487 kb on - strand, within ABID97_RS04710 at 982.498 kb on + strand, within ABID97_RS04710 at 982.919 kb on + strand at 982.919 kb on + strand at 982.919 kb on + strand at 982.919 kb on + strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 982.920 kb on - strand at 983.174 kb on + strand, within ABID97_RS04715 at 983.195 kb on + strand, within ABID97_RS04715 at 983.195 kb on + strand, within ABID97_RS04715 at 983.196 kb on - strand, within ABID97_RS04715 at 983.372 kb on + strand, within ABID97_RS04715 at 983.435 kb on + strand, within ABID97_RS04715 at 983.475 kb on - strand, within ABID97_RS04715 at 983.475 kb on - strand, within ABID97_RS04715 at 983.513 kb on + strand, within ABID97_RS04715 at 983.513 kb on + strand, within ABID97_RS04715 at 983.514 kb on - strand, within ABID97_RS04715 at 983.597 kb on + strand at 983.597 kb on + strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.664 kb on - strand at 983.685 kb on + strand at 983.705 kb on + strand at 983.801 kb on + strand at 983.801 kb on + strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.802 kb on - strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.803 kb on + strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.804 kb on - strand at 983.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 980,022 - ABID97_RS04705 0.45 +1.3 980,791 + -2.9 980,842 + -3.2 980,881 + -0.5 980,881 + -2.3 981,095 - ABID97_RS04710 0.16 -2.9 981,095 - ABID97_RS04710 0.16 -3.5 981,269 - ABID97_RS04710 0.24 -3.3 981,751 + ABID97_RS04710 0.47 -1.7 981,751 + ABID97_RS04710 0.47 -0.7 981,752 - ABID97_RS04710 0.47 -3.9 981,752 - ABID97_RS04710 0.47 +1.2 981,752 - ABID97_RS04710 0.47 +1.6 981,752 - ABID97_RS04710 0.47 -3.6 981,860 - ABID97_RS04710 0.52 -2.7 981,956 - ABID97_RS04710 0.56 -1.4 982,337 - ABID97_RS04710 0.73 +0.2 982,436 - ABID97_RS04710 0.78 -3.5 982,485 + ABID97_RS04710 0.80 +0.4 982,487 - ABID97_RS04710 0.80 +1.0 982,498 + ABID97_RS04710 0.81 -4.9 982,919 + -1.6 982,919 + -1.2 982,919 + -0.4 982,919 + -1.2 982,920 - -0.7 982,920 - -0.5 982,920 - -1.7 982,920 - -0.3 982,920 - -0.2 982,920 - -0.8 982,920 - -0.4 982,920 - +2.0 983,174 + ABID97_RS04715 0.29 +0.4 983,195 + ABID97_RS04715 0.32 -0.2 983,195 + ABID97_RS04715 0.32 +0.2 983,196 - ABID97_RS04715 0.33 -0.5 983,372 + ABID97_RS04715 0.59 -0.0 983,435 + ABID97_RS04715 0.68 -0.4 983,475 - ABID97_RS04715 0.74 -0.6 983,475 - ABID97_RS04715 0.74 -1.5 983,513 + ABID97_RS04715 0.79 -1.9 983,513 + ABID97_RS04715 0.79 +0.1 983,514 - ABID97_RS04715 0.79 +0.1 983,597 + +0.1 983,597 + +0.8 983,598 - +0.1 983,598 - -0.9 983,598 - -1.7 983,598 - -1.4 983,598 - +0.0 983,664 - -0.4 983,685 + -0.3 983,705 + -0.0 983,801 + +0.4 983,801 + -1.1 983,802 - +0.2 983,802 - -0.2 983,802 - +1.0 983,802 - +0.5 983,803 + +0.2 983,803 + +0.2 983,803 + +0.8 983,803 + -0.6 983,803 + -0.0 983,804 - +1.0 983,804 - -0.1 983,804 - -0.1 983,804 - +0.6 983,804 - -0.0 983,804 - +0.1 983,804 - +0.2 983,804 - +0.0 983,818 - -0.0
Or see this region's nucleotide sequence