Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04555 and ABID97_RS04560 are separated by 146 nucleotides ABID97_RS04560 and ABID97_RS04565 are separated by 30 nucleotides ABID97_RS04565 and ABID97_RS04570 overlap by 4 nucleotides
ABID97_RS04555: ABID97_RS04555 - alpha-amylase family glycosyl hydrolase, at 946,793 to 948,482
_RS04555
ABID97_RS04560: ABID97_RS04560 - NAD(P)/FAD-dependent oxidoreductase, at 948,629 to 950,107
_RS04560
ABID97_RS04565: ABID97_RS04565 - CMD domain protein, at 950,138 to 950,659
_RS04565
ABID97_RS04570: ABID97_RS04570 - peroxidase-related enzyme, at 950,656 to 951,246
_RS04570
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -1
0
1
2 at 947.986 kb on - strand, within ABID97_RS04555 at 947.986 kb on - strand, within ABID97_RS04555 at 947.986 kb on - strand, within ABID97_RS04555 at 947.988 kb on + strand, within ABID97_RS04555 at 948.088 kb on + strand, within ABID97_RS04555 at 948.088 kb on + strand, within ABID97_RS04555 at 948.088 kb on + strand, within ABID97_RS04555 at 948.089 kb on - strand, within ABID97_RS04555 at 948.089 kb on - strand, within ABID97_RS04555 at 948.089 kb on - strand, within ABID97_RS04555 at 948.089 kb on - strand, within ABID97_RS04555 at 948.089 kb on - strand, within ABID97_RS04555 at 948.278 kb on - strand, within ABID97_RS04555 at 948.571 kb on + strand at 948.571 kb on + strand at 948.572 kb on - strand at 948.572 kb on - strand at 949.055 kb on + strand, within ABID97_RS04560 at 949.055 kb on + strand, within ABID97_RS04560 at 949.055 kb on + strand, within ABID97_RS04560 at 949.056 kb on - strand, within ABID97_RS04560 at 949.056 kb on - strand, within ABID97_RS04560 at 949.304 kb on + strand, within ABID97_RS04560 at 949.304 kb on + strand, within ABID97_RS04560 at 949.305 kb on - strand, within ABID97_RS04560 at 949.305 kb on - strand, within ABID97_RS04560 at 949.524 kb on - strand, within ABID97_RS04560 at 949.524 kb on - strand, within ABID97_RS04560 at 949.524 kb on - strand, within ABID97_RS04560 at 950.042 kb on + strand at 950.043 kb on - strand at 950.267 kb on + strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.607 kb on + strand at 950.800 kb on + strand, within ABID97_RS04570 at 950.801 kb on - strand, within ABID97_RS04570 at 950.944 kb on + strand, within ABID97_RS04570 at 950.945 kb on - strand, within ABID97_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 947,986 - ABID97_RS04555 0.71 -0.1 947,986 - ABID97_RS04555 0.71 -0.1 947,986 - ABID97_RS04555 0.71 +1.2 947,988 + ABID97_RS04555 0.71 +1.0 948,088 + ABID97_RS04555 0.77 +1.5 948,088 + ABID97_RS04555 0.77 -0.7 948,088 + ABID97_RS04555 0.77 +0.6 948,089 - ABID97_RS04555 0.77 -1.0 948,089 - ABID97_RS04555 0.77 +0.2 948,089 - ABID97_RS04555 0.77 +2.4 948,089 - ABID97_RS04555 0.77 -0.1 948,089 - ABID97_RS04555 0.77 -0.6 948,278 - ABID97_RS04555 0.88 +0.8 948,571 + +1.4 948,571 + +0.4 948,572 - +2.2 948,572 - +1.4 949,055 + ABID97_RS04560 0.29 +1.6 949,055 + ABID97_RS04560 0.29 +1.2 949,055 + ABID97_RS04560 0.29 +2.2 949,056 - ABID97_RS04560 0.29 +1.0 949,056 - ABID97_RS04560 0.29 +1.8 949,304 + ABID97_RS04560 0.46 +1.6 949,304 + ABID97_RS04560 0.46 +1.8 949,305 - ABID97_RS04560 0.46 +0.4 949,305 - ABID97_RS04560 0.46 +0.5 949,524 - ABID97_RS04560 0.61 -0.7 949,524 - ABID97_RS04560 0.61 +1.1 949,524 - ABID97_RS04560 0.61 +2.0 950,042 + +1.2 950,043 - +2.4 950,267 + ABID97_RS04565 0.25 -0.1 950,268 - ABID97_RS04565 0.25 +0.2 950,268 - ABID97_RS04565 0.25 -0.7 950,268 - ABID97_RS04565 0.25 -1.0 950,607 + +1.4 950,800 + ABID97_RS04570 0.24 -0.1 950,801 - ABID97_RS04570 0.25 -0.8 950,944 + ABID97_RS04570 0.49 -0.2 950,945 - ABID97_RS04570 0.49 +1.1
Or see this region's nucleotide sequence