Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04535 and ABID97_RS04540 are separated by 17 nucleotides ABID97_RS04540 and ABID97_RS04545 are separated by 40 nucleotides
ABID97_RS04535: ABID97_RS04535 - glycogen synthase GlgA, at 939,641 to 941,125
_RS04535
ABID97_RS04540: ABID97_RS04540 - glucose-1-phosphate adenylyltransferase, at 941,143 to 942,447
_RS04540
ABID97_RS04545: ABID97_RS04545 - glycogen debranching protein GlgX, at 942,488 to 944,611
_RS04545
Position (kb) 941
942
943 Strain fitness (log2 ratio) -1
0
1
2 at 940.449 kb on + strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.482 kb on + strand, within ABID97_RS04535 at 940.522 kb on - strand, within ABID97_RS04535 at 940.668 kb on + strand, within ABID97_RS04535 at 940.669 kb on - strand, within ABID97_RS04535 at 940.669 kb on - strand, within ABID97_RS04535 at 940.846 kb on - strand, within ABID97_RS04535 at 940.870 kb on - strand, within ABID97_RS04535 at 941.118 kb on - strand at 941.118 kb on - strand at 941.528 kb on + strand, within ABID97_RS04540 at 941.528 kb on + strand, within ABID97_RS04540 at 941.528 kb on + strand, within ABID97_RS04540 at 941.528 kb on + strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.529 kb on - strand, within ABID97_RS04540 at 941.609 kb on + strand, within ABID97_RS04540 at 941.766 kb on - strand, within ABID97_RS04540 at 941.771 kb on + strand, within ABID97_RS04540 at 941.789 kb on + strand, within ABID97_RS04540 at 941.790 kb on - strand, within ABID97_RS04540 at 941.790 kb on - strand, within ABID97_RS04540 at 941.790 kb on - strand, within ABID97_RS04540 at 941.790 kb on - strand, within ABID97_RS04540 at 941.790 kb on - strand, within ABID97_RS04540 at 941.991 kb on - strand, within ABID97_RS04540 at 942.003 kb on - strand, within ABID97_RS04540 at 942.032 kb on + strand, within ABID97_RS04540 at 942.032 kb on + strand, within ABID97_RS04540 at 942.032 kb on + strand, within ABID97_RS04540 at 942.032 kb on + strand at 942.033 kb on - strand, within ABID97_RS04540 at 942.033 kb on - strand, within ABID97_RS04540 at 942.033 kb on - strand, within ABID97_RS04540 at 942.101 kb on + strand, within ABID97_RS04540 at 942.218 kb on + strand, within ABID97_RS04540 at 942.219 kb on - strand, within ABID97_RS04540 at 942.219 kb on - strand, within ABID97_RS04540 at 942.305 kb on + strand, within ABID97_RS04540 at 942.305 kb on + strand, within ABID97_RS04540 at 942.305 kb on + strand, within ABID97_RS04540 at 942.306 kb on - strand, within ABID97_RS04540 at 942.509 kb on - strand at 942.509 kb on - strand at 942.984 kb on + strand, within ABID97_RS04545 at 942.984 kb on + strand, within ABID97_RS04545
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 940,449 + ABID97_RS04535 0.54 -0.1 940,450 - ABID97_RS04535 0.54 +0.1 940,450 - ABID97_RS04535 0.54 -0.5 940,450 - ABID97_RS04535 0.54 +0.5 940,482 + ABID97_RS04535 0.57 +1.6 940,522 - ABID97_RS04535 0.59 +1.0 940,668 + ABID97_RS04535 0.69 +1.8 940,669 - ABID97_RS04535 0.69 -0.8 940,669 - ABID97_RS04535 0.69 +0.7 940,846 - ABID97_RS04535 0.81 +0.4 940,870 - ABID97_RS04535 0.83 +0.6 941,118 - -0.3 941,118 - -0.1 941,528 + ABID97_RS04540 0.30 -0.0 941,528 + ABID97_RS04540 0.30 +1.2 941,528 + ABID97_RS04540 0.30 +0.6 941,528 + ABID97_RS04540 0.30 +1.4 941,529 - ABID97_RS04540 0.30 +0.9 941,529 - ABID97_RS04540 0.30 +1.2 941,529 - ABID97_RS04540 0.30 +2.4 941,529 - ABID97_RS04540 0.30 +0.2 941,529 - ABID97_RS04540 0.30 +0.3 941,529 - ABID97_RS04540 0.30 +0.7 941,609 + ABID97_RS04540 0.36 +0.9 941,766 - ABID97_RS04540 0.48 +0.9 941,771 + ABID97_RS04540 0.48 +1.3 941,789 + ABID97_RS04540 0.50 +1.0 941,790 - ABID97_RS04540 0.50 +1.1 941,790 - ABID97_RS04540 0.50 +1.8 941,790 - ABID97_RS04540 0.50 +0.2 941,790 - ABID97_RS04540 0.50 +0.8 941,790 - ABID97_RS04540 0.50 +0.8 941,991 - ABID97_RS04540 0.65 +0.9 942,003 - ABID97_RS04540 0.66 +0.8 942,032 + ABID97_RS04540 0.68 +0.0 942,032 + ABID97_RS04540 0.68 +0.1 942,032 + ABID97_RS04540 0.68 +0.2 942,032 + +1.8 942,033 - ABID97_RS04540 0.68 +0.5 942,033 - ABID97_RS04540 0.68 -0.0 942,033 - ABID97_RS04540 0.68 -0.4 942,101 + ABID97_RS04540 0.73 +0.7 942,218 + ABID97_RS04540 0.82 +0.4 942,219 - ABID97_RS04540 0.82 -0.9 942,219 - ABID97_RS04540 0.82 +0.4 942,305 + ABID97_RS04540 0.89 +0.2 942,305 + ABID97_RS04540 0.89 +0.4 942,305 + ABID97_RS04540 0.89 -0.4 942,306 - ABID97_RS04540 0.89 +0.1 942,509 - +1.7 942,509 - +1.6 942,984 + ABID97_RS04545 0.23 +1.7 942,984 + ABID97_RS04545 0.23 +0.7
Or see this region's nucleotide sequence