Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04255 and ABID97_RS04260 are separated by 71 nucleotides ABID97_RS04260 and ABID97_RS04265 are separated by 22 nucleotides
ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034
_RS04255
ABID97_RS04260: ABID97_RS04260 - fumarylacetoacetate hydrolase family protein, at 875,106 to 875,813
_RS04260
ABID97_RS04265: ABID97_RS04265 - 3-hydroxybenzoate 6-monooxygenase, at 875,836 to 877,089
_RS04265
Position (kb) 875
876 Strain fitness (log2 ratio) -1
0
1 at 874.117 kb on + strand, within ABID97_RS04255 at 874.117 kb on + strand, within ABID97_RS04255 at 874.372 kb on + strand, within ABID97_RS04255 at 874.372 kb on + strand, within ABID97_RS04255 at 874.373 kb on - strand, within ABID97_RS04255 at 874.636 kb on + strand, within ABID97_RS04255 at 874.636 kb on + strand, within ABID97_RS04255 at 874.832 kb on - strand, within ABID97_RS04255 at 875.205 kb on + strand, within ABID97_RS04260 at 875.206 kb on - strand, within ABID97_RS04260 at 875.206 kb on - strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.350 kb on - strand, within ABID97_RS04260 at 875.351 kb on - strand, within ABID97_RS04260 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.610 kb on + strand, within ABID97_RS04265 at 876.610 kb on + strand, within ABID97_RS04265 at 876.760 kb on + strand, within ABID97_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 874,117 + ABID97_RS04255 0.15 +0.2 874,117 + ABID97_RS04255 0.15 +0.2 874,372 + ABID97_RS04255 0.39 +0.3 874,372 + ABID97_RS04255 0.39 +0.4 874,373 - ABID97_RS04255 0.39 -0.5 874,636 + ABID97_RS04255 0.63 -0.1 874,636 + ABID97_RS04255 0.63 +0.1 874,832 - ABID97_RS04255 0.81 -0.1 875,205 + ABID97_RS04260 0.14 +1.0 875,206 - ABID97_RS04260 0.14 -0.3 875,206 - ABID97_RS04260 0.14 +0.8 875,349 + ABID97_RS04260 0.34 -0.4 875,349 + ABID97_RS04260 0.34 -0.6 875,349 + ABID97_RS04260 0.34 -0.1 875,349 + ABID97_RS04260 0.34 -0.7 875,349 + ABID97_RS04260 0.34 +0.2 875,350 - ABID97_RS04260 0.34 +0.1 875,351 - ABID97_RS04260 0.35 +0.9 876,529 + ABID97_RS04265 0.55 -0.1 876,529 + ABID97_RS04265 0.55 +1.5 876,529 + ABID97_RS04265 0.55 -0.4 876,529 + ABID97_RS04265 0.55 -0.3 876,529 + ABID97_RS04265 0.55 -0.9 876,530 - ABID97_RS04265 0.55 +0.0 876,530 - ABID97_RS04265 0.55 -0.7 876,530 - ABID97_RS04265 0.55 -0.4 876,530 - ABID97_RS04265 0.55 -0.5 876,530 - ABID97_RS04265 0.55 -1.3 876,610 + ABID97_RS04265 0.62 +0.1 876,610 + ABID97_RS04265 0.62 +0.4 876,760 + ABID97_RS04265 0.74 -0.6
Or see this region's nucleotide sequence