Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04010 and ABID97_RS04015 are separated by 148 nucleotides ABID97_RS04015 and ABID97_RS04020 are separated by 138 nucleotides
ABID97_RS04010: ABID97_RS04010 - ABC transporter permease, at 821,637 to 822,803
_RS04010
ABID97_RS04015: ABID97_RS04015 - LysR family transcriptional regulator, at 822,952 to 823,878
_RS04015
ABID97_RS04020: ABID97_RS04020 - GMC family oxidoreductase N-terminal domain-containing protein, at 824,017 to 825,648
_RS04020
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 822.214 kb on + strand, within ABID97_RS04010 at 822.215 kb on - strand, within ABID97_RS04010 at 822.215 kb on - strand, within ABID97_RS04010 at 822.284 kb on - strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.476 kb on - strand, within ABID97_RS04010 at 822.476 kb on - strand, within ABID97_RS04010 at 822.826 kb on + strand at 822.935 kb on - strand at 822.935 kb on - strand at 822.935 kb on - strand at 823.881 kb on - strand at 823.984 kb on + strand at 824.041 kb on + strand at 824.041 kb on + strand at 824.041 kb on + strand at 824.147 kb on - strand at 824.173 kb on + strand at 824.173 kb on + strand at 824.212 kb on + strand, within ABID97_RS04020 at 824.308 kb on + strand, within ABID97_RS04020 at 824.308 kb on + strand, within ABID97_RS04020 at 824.309 kb on - strand, within ABID97_RS04020 at 824.309 kb on - strand, within ABID97_RS04020 at 824.309 kb on - strand, within ABID97_RS04020 at 824.309 kb on - strand, within ABID97_RS04020 at 824.332 kb on + strand, within ABID97_RS04020 at 824.333 kb on - strand, within ABID97_RS04020 at 824.413 kb on + strand, within ABID97_RS04020 at 824.413 kb on + strand, within ABID97_RS04020 at 824.413 kb on + strand, within ABID97_RS04020 at 824.414 kb on - strand, within ABID97_RS04020 at 824.416 kb on + strand, within ABID97_RS04020 at 824.575 kb on + strand, within ABID97_RS04020 at 824.645 kb on - strand, within ABID97_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 822,214 + ABID97_RS04010 0.49 +1.6 822,215 - ABID97_RS04010 0.50 +1.4 822,215 - ABID97_RS04010 0.50 +0.2 822,284 - ABID97_RS04010 0.55 +0.4 822,475 + ABID97_RS04010 0.72 +1.0 822,475 + ABID97_RS04010 0.72 +1.5 822,475 + ABID97_RS04010 0.72 +0.8 822,476 - ABID97_RS04010 0.72 +0.7 822,476 - ABID97_RS04010 0.72 -0.1 822,826 + +0.5 822,935 - -0.1 822,935 - -0.3 822,935 - -0.2 823,881 - -1.4 823,984 + +2.4 824,041 + +1.2 824,041 + -0.7 824,041 + -0.8 824,147 - -0.2 824,173 + -0.4 824,173 + +0.8 824,212 + ABID97_RS04020 0.12 -2.8 824,308 + ABID97_RS04020 0.18 -0.3 824,308 + ABID97_RS04020 0.18 -0.3 824,309 - ABID97_RS04020 0.18 -0.3 824,309 - ABID97_RS04020 0.18 +2.2 824,309 - ABID97_RS04020 0.18 +0.7 824,309 - ABID97_RS04020 0.18 -1.3 824,332 + ABID97_RS04020 0.19 -0.9 824,333 - ABID97_RS04020 0.19 -0.9 824,413 + ABID97_RS04020 0.24 -0.3 824,413 + ABID97_RS04020 0.24 +0.3 824,413 + ABID97_RS04020 0.24 +0.3 824,414 - ABID97_RS04020 0.24 +1.4 824,416 + ABID97_RS04020 0.24 -0.8 824,575 + ABID97_RS04020 0.34 +0.3 824,645 - ABID97_RS04020 0.38 -0.7
Or see this region's nucleotide sequence