Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03905

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS03895 and ABID97_RS03900 overlap by 4 nucleotidesABID97_RS03900 and ABID97_RS03905 are separated by 6 nucleotidesABID97_RS03905 and ABID97_RS03910 are separated by 12 nucleotidesABID97_RS03910 and ABID97_RS03915 are separated by 9 nucleotides ABID97_RS03895: ABID97_RS03895 - isochorismatase family cysteine hydrolase, at 799,081 to 799,752 _RS03895 ABID97_RS03900: ABID97_RS03900 - GntR family transcriptional regulator, at 799,749 to 800,522 _RS03900 ABID97_RS03905: ABID97_RS03905 - exodeoxyribonuclease III, at 800,529 to 801,332 _RS03905 ABID97_RS03910: ABID97_RS03910 - orotate phosphoribosyltransferase, at 801,345 to 802,028 _RS03910 ABID97_RS03915: ABID97_RS03915 - DUF4124 domain-containing protein, at 802,038 to 802,730 _RS03915 Position (kb) 800 801 802Strain fitness (log2 ratio) -2 -1 0 1 2at 799.640 kb on - strand, within ABID97_RS03895at 799.640 kb on - strand, within ABID97_RS03895at 799.640 kb on - strand, within ABID97_RS03895at 799.640 kb on - strand, within ABID97_RS03895at 799.640 kb on - strand, within ABID97_RS03895at 799.761 kb on - strandat 799.761 kb on - strandat 800.070 kb on + strand, within ABID97_RS03900at 800.070 kb on + strand, within ABID97_RS03900at 800.070 kb on + strand, within ABID97_RS03900at 800.070 kb on + strand, within ABID97_RS03900at 800.070 kb on + strand, within ABID97_RS03900at 800.358 kb on + strand, within ABID97_RS03900at 800.359 kb on - strand, within ABID97_RS03900at 800.359 kb on - strand, within ABID97_RS03900at 800.545 kb on + strandat 800.545 kb on + strandat 800.546 kb on - strandat 800.590 kb on + strandat 800.591 kb on - strandat 800.642 kb on - strand, within ABID97_RS03905at 800.671 kb on + strand, within ABID97_RS03905at 800.701 kb on + strand, within ABID97_RS03905at 800.701 kb on + strand, within ABID97_RS03905at 800.701 kb on + strand, within ABID97_RS03905at 800.702 kb on - strand, within ABID97_RS03905at 800.702 kb on - strand, within ABID97_RS03905at 800.702 kb on - strand, within ABID97_RS03905at 800.702 kb on - strand, within ABID97_RS03905at 800.995 kb on + strand, within ABID97_RS03905at 800.995 kb on + strand, within ABID97_RS03905at 800.996 kb on - strand, within ABID97_RS03905at 800.996 kb on - strand, within ABID97_RS03905at 800.996 kb on - strand, within ABID97_RS03905at 800.996 kb on - strand, within ABID97_RS03905at 801.049 kb on + strand, within ABID97_RS03905at 801.049 kb on + strand, within ABID97_RS03905at 801.092 kb on + strand, within ABID97_RS03905at 801.093 kb on - strand, within ABID97_RS03905at 801.093 kb on - strand, within ABID97_RS03905at 801.093 kb on - strand, within ABID97_RS03905at 801.118 kb on + strand, within ABID97_RS03905at 801.119 kb on - strand, within ABID97_RS03905at 801.119 kb on - strand, within ABID97_RS03905at 801.163 kb on + strand, within ABID97_RS03905at 801.164 kb on - strand, within ABID97_RS03905at 801.164 kb on - strand, within ABID97_RS03905at 801.164 kb on - strand, within ABID97_RS03905at 801.240 kb on - strand, within ABID97_RS03905at 801.240 kb on - strand, within ABID97_RS03905at 801.352 kb on + strandat 801.352 kb on + strandat 801.352 kb on + strandat 801.353 kb on - strandat 801.353 kb on - strandat 801.353 kb on - strandat 801.353 kb on - strandat 801.353 kb on - strandat 801.462 kb on + strand, within ABID97_RS03910at 801.522 kb on + strand, within ABID97_RS03910at 801.522 kb on + strand, within ABID97_RS03910at 801.579 kb on + strand, within ABID97_RS03910at 801.639 kb on + strand, within ABID97_RS03910at 801.640 kb on - strand, within ABID97_RS03910at 801.882 kb on + strand, within ABID97_RS03910at 801.946 kb on - strand, within ABID97_RS03910at 802.176 kb on + strand, within ABID97_RS03915at 802.176 kb on + strand, within ABID97_RS03915at 802.176 kb on + strand, within ABID97_RS03915at 802.177 kb on - strand, within ABID97_RS03915at 802.299 kb on + strand, within ABID97_RS03915at 802.299 kb on + strand, within ABID97_RS03915at 802.300 kb on - strand, within ABID97_RS03915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
799,640 - ABID97_RS03895 0.83 -0.1
799,640 - ABID97_RS03895 0.83 -0.5
799,640 - ABID97_RS03895 0.83 -0.1
799,640 - ABID97_RS03895 0.83 +1.2
799,640 - ABID97_RS03895 0.83 -0.3
799,761 - -0.7
799,761 - -1.7
800,070 + ABID97_RS03900 0.41 -1.0
800,070 + ABID97_RS03900 0.41 -0.4
800,070 + ABID97_RS03900 0.41 +0.9
800,070 + ABID97_RS03900 0.41 -0.5
800,070 + ABID97_RS03900 0.41 +0.4
800,358 + ABID97_RS03900 0.79 -0.4
800,359 - ABID97_RS03900 0.79 +0.3
800,359 - ABID97_RS03900 0.79 -0.2
800,545 + +0.2
800,545 + +0.3
800,546 - -1.2
800,590 + +1.0
800,591 - -0.9
800,642 - ABID97_RS03905 0.14 +1.3
800,671 + ABID97_RS03905 0.18 +0.5
800,701 + ABID97_RS03905 0.21 +0.2
800,701 + ABID97_RS03905 0.21 +0.7
800,701 + ABID97_RS03905 0.21 +0.3
800,702 - ABID97_RS03905 0.22 +0.9
800,702 - ABID97_RS03905 0.22 +0.1
800,702 - ABID97_RS03905 0.22 +0.4
800,702 - ABID97_RS03905 0.22 +1.5
800,995 + ABID97_RS03905 0.58 +0.7
800,995 + ABID97_RS03905 0.58 +1.9
800,996 - ABID97_RS03905 0.58 +0.2
800,996 - ABID97_RS03905 0.58 +1.2
800,996 - ABID97_RS03905 0.58 +1.8
800,996 - ABID97_RS03905 0.58 -0.9
801,049 + ABID97_RS03905 0.65 -0.5
801,049 + ABID97_RS03905 0.65 -0.0
801,092 + ABID97_RS03905 0.70 +0.3
801,093 - ABID97_RS03905 0.70 -0.2
801,093 - ABID97_RS03905 0.70 +0.5
801,093 - ABID97_RS03905 0.70 +0.9
801,118 + ABID97_RS03905 0.73 -0.3
801,119 - ABID97_RS03905 0.73 -0.3
801,119 - ABID97_RS03905 0.73 -0.4
801,163 + ABID97_RS03905 0.79 +0.1
801,164 - ABID97_RS03905 0.79 +0.8
801,164 - ABID97_RS03905 0.79 -0.3
801,164 - ABID97_RS03905 0.79 +0.0
801,240 - ABID97_RS03905 0.88 +1.8
801,240 - ABID97_RS03905 0.88 +1.2
801,352 + +1.2
801,352 + -0.6
801,352 + -0.6
801,353 - +1.9
801,353 - -0.3
801,353 - -0.7
801,353 - -0.0
801,353 - -0.6
801,462 + ABID97_RS03910 0.17 +1.9
801,522 + ABID97_RS03910 0.26 +1.4
801,522 + ABID97_RS03910 0.26 +0.7
801,579 + ABID97_RS03910 0.34 +1.0
801,639 + ABID97_RS03910 0.43 +0.6
801,640 - ABID97_RS03910 0.43 +2.6
801,882 + ABID97_RS03910 0.79 +1.2
801,946 - ABID97_RS03910 0.88 +0.9
802,176 + ABID97_RS03915 0.20 -1.7
802,176 + ABID97_RS03915 0.20 -1.8
802,176 + ABID97_RS03915 0.20 -2.7
802,177 - ABID97_RS03915 0.20 +0.3
802,299 + ABID97_RS03915 0.38 -2.6
802,299 + ABID97_RS03915 0.38 -1.7
802,300 - ABID97_RS03915 0.38 -0.8

Or see this region's nucleotide sequence