Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03340 and ABID97_RS03345 are separated by 74 nucleotides ABID97_RS03345 and ABID97_RS03350 are separated by 8 nucleotides ABID97_RS03350 and ABID97_RS03355 are separated by 125 nucleotides
ABID97_RS03340: ABID97_RS03340 - nucleoside recognition domain-containing protein, at 675,132 to 676,361
_RS03340
ABID97_RS03345: ABID97_RS03345 - phospholipase D family protein, at 676,436 to 678,019
_RS03345
ABID97_RS03350: ABID97_RS03350 - metallophosphoesterase, at 678,028 to 678,834
_RS03350
ABID97_RS03355: ABID97_RS03355 - hypothetical protein, at 678,960 to 679,133
_RS03355
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.520 kb on + strand, within ABID97_RS03340 at 675.521 kb on - strand, within ABID97_RS03340 at 675.581 kb on - strand, within ABID97_RS03340 at 675.581 kb on - strand, within ABID97_RS03340 at 675.742 kb on + strand, within ABID97_RS03340 at 675.743 kb on - strand, within ABID97_RS03340 at 675.743 kb on - strand, within ABID97_RS03340 at 675.883 kb on + strand, within ABID97_RS03340 at 675.883 kb on + strand, within ABID97_RS03340 at 675.884 kb on - strand, within ABID97_RS03340 at 676.260 kb on + strand at 676.261 kb on - strand at 676.261 kb on - strand at 676.261 kb on - strand at 676.395 kb on + strand at 676.395 kb on + strand at 676.396 kb on - strand at 676.396 kb on - strand at 676.423 kb on + strand at 676.718 kb on + strand, within ABID97_RS03345 at 676.718 kb on + strand, within ABID97_RS03345 at 676.718 kb on + strand, within ABID97_RS03345 at 676.719 kb on - strand, within ABID97_RS03345 at 676.719 kb on - strand, within ABID97_RS03345 at 676.719 kb on - strand, within ABID97_RS03345 at 676.721 kb on + strand, within ABID97_RS03345 at 676.721 kb on + strand, within ABID97_RS03345 at 676.722 kb on - strand, within ABID97_RS03345 at 676.820 kb on + strand, within ABID97_RS03345 at 676.821 kb on - strand, within ABID97_RS03345 at 677.039 kb on + strand, within ABID97_RS03345 at 677.040 kb on - strand, within ABID97_RS03345 at 677.040 kb on - strand, within ABID97_RS03345 at 677.385 kb on - strand, within ABID97_RS03345 at 677.459 kb on + strand, within ABID97_RS03345 at 677.459 kb on + strand, within ABID97_RS03345 at 677.459 kb on + strand, within ABID97_RS03345 at 677.460 kb on - strand, within ABID97_RS03345 at 677.624 kb on + strand, within ABID97_RS03345 at 677.625 kb on - strand, within ABID97_RS03345 at 677.776 kb on + strand, within ABID97_RS03345 at 677.777 kb on - strand, within ABID97_RS03345 at 677.823 kb on - strand, within ABID97_RS03345 at 677.823 kb on - strand, within ABID97_RS03345 at 677.823 kb on - strand, within ABID97_RS03345 at 677.910 kb on - strand at 678.017 kb on + strand at 678.128 kb on + strand, within ABID97_RS03350 at 678.128 kb on + strand, within ABID97_RS03350 at 678.128 kb on + strand, within ABID97_RS03350 at 678.129 kb on - strand, within ABID97_RS03350 at 678.129 kb on - strand, within ABID97_RS03350 at 678.129 kb on - strand, within ABID97_RS03350 at 678.231 kb on - strand, within ABID97_RS03350 at 678.404 kb on + strand, within ABID97_RS03350 at 678.404 kb on + strand, within ABID97_RS03350 at 678.404 kb on + strand, within ABID97_RS03350 at 678.405 kb on - strand, within ABID97_RS03350 at 678.405 kb on - strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.620 kb on + strand, within ABID97_RS03350 at 678.621 kb on - strand, within ABID97_RS03350 at 678.621 kb on - strand, within ABID97_RS03350 at 678.621 kb on - strand, within ABID97_RS03350 at 678.621 kb on - strand, within ABID97_RS03350 at 678.621 kb on - strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.641 kb on + strand, within ABID97_RS03350 at 678.642 kb on - strand, within ABID97_RS03350 at 678.642 kb on - strand, within ABID97_RS03350 at 678.642 kb on - strand, within ABID97_RS03350 at 678.642 kb on - strand, within ABID97_RS03350 at 678.725 kb on + strand, within ABID97_RS03350 at 678.726 kb on - strand, within ABID97_RS03350 at 678.726 kb on - strand, within ABID97_RS03350 at 678.726 kb on - strand, within ABID97_RS03350 at 678.848 kb on + strand at 678.848 kb on + strand at 678.848 kb on + strand at 678.868 kb on + strand at 678.868 kb on + strand at 678.869 kb on - strand at 678.869 kb on - strand at 678.869 kb on - strand at 678.869 kb on - strand at 678.869 kb on - strand at 678.910 kb on + strand at 678.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 675,520 + ABID97_RS03340 0.32 -0.7 675,521 - ABID97_RS03340 0.32 +1.1 675,581 - ABID97_RS03340 0.37 -0.1 675,581 - ABID97_RS03340 0.37 -0.3 675,742 + ABID97_RS03340 0.50 +1.3 675,743 - ABID97_RS03340 0.50 -0.3 675,743 - ABID97_RS03340 0.50 +0.0 675,883 + ABID97_RS03340 0.61 -0.3 675,883 + ABID97_RS03340 0.61 -0.6 675,884 - ABID97_RS03340 0.61 -1.0 676,260 + +0.5 676,261 - -0.4 676,261 - +0.0 676,261 - +1.4 676,395 + +0.1 676,395 + -0.6 676,396 - -0.5 676,396 - -0.7 676,423 + -0.5 676,718 + ABID97_RS03345 0.18 -0.1 676,718 + ABID97_RS03345 0.18 +0.1 676,718 + ABID97_RS03345 0.18 -0.5 676,719 - ABID97_RS03345 0.18 -1.8 676,719 - ABID97_RS03345 0.18 -0.4 676,719 - ABID97_RS03345 0.18 +0.4 676,721 + ABID97_RS03345 0.18 +1.4 676,721 + ABID97_RS03345 0.18 -0.2 676,722 - ABID97_RS03345 0.18 -0.2 676,820 + ABID97_RS03345 0.24 -1.5 676,821 - ABID97_RS03345 0.24 -0.7 677,039 + ABID97_RS03345 0.38 -0.3 677,040 - ABID97_RS03345 0.38 -0.7 677,040 - ABID97_RS03345 0.38 +0.3 677,385 - ABID97_RS03345 0.60 -0.2 677,459 + ABID97_RS03345 0.65 -0.7 677,459 + ABID97_RS03345 0.65 -1.0 677,459 + ABID97_RS03345 0.65 -0.2 677,460 - ABID97_RS03345 0.65 -0.2 677,624 + ABID97_RS03345 0.75 -0.4 677,625 - ABID97_RS03345 0.75 -0.4 677,776 + ABID97_RS03345 0.85 -0.7 677,777 - ABID97_RS03345 0.85 +0.1 677,823 - ABID97_RS03345 0.88 -0.9 677,823 - ABID97_RS03345 0.88 -0.3 677,823 - ABID97_RS03345 0.88 -0.7 677,910 - +0.0 678,017 + +0.1 678,128 + ABID97_RS03350 0.12 -0.4 678,128 + ABID97_RS03350 0.12 -1.0 678,128 + ABID97_RS03350 0.12 -0.4 678,129 - ABID97_RS03350 0.13 -1.0 678,129 - ABID97_RS03350 0.13 +2.0 678,129 - ABID97_RS03350 0.13 -0.4 678,231 - ABID97_RS03350 0.25 -0.9 678,404 + ABID97_RS03350 0.47 +0.0 678,404 + ABID97_RS03350 0.47 -0.2 678,404 + ABID97_RS03350 0.47 -0.8 678,405 - ABID97_RS03350 0.47 +0.1 678,405 - ABID97_RS03350 0.47 -0.0 678,620 + ABID97_RS03350 0.73 +1.1 678,620 + ABID97_RS03350 0.73 -0.6 678,620 + ABID97_RS03350 0.73 -0.1 678,620 + ABID97_RS03350 0.73 -0.6 678,620 + ABID97_RS03350 0.73 +0.0 678,620 + ABID97_RS03350 0.73 -0.4 678,621 - ABID97_RS03350 0.73 -2.5 678,621 - ABID97_RS03350 0.73 -0.5 678,621 - ABID97_RS03350 0.73 -0.8 678,621 - ABID97_RS03350 0.73 -0.2 678,621 - ABID97_RS03350 0.73 +0.6 678,641 + ABID97_RS03350 0.76 +0.3 678,641 + ABID97_RS03350 0.76 -0.6 678,641 + ABID97_RS03350 0.76 -0.2 678,641 + ABID97_RS03350 0.76 +0.3 678,641 + ABID97_RS03350 0.76 -0.3 678,641 + ABID97_RS03350 0.76 -0.5 678,641 + ABID97_RS03350 0.76 +0.4 678,641 + ABID97_RS03350 0.76 -0.3 678,641 + ABID97_RS03350 0.76 -0.3 678,642 - ABID97_RS03350 0.76 +0.0 678,642 - ABID97_RS03350 0.76 -0.5 678,642 - ABID97_RS03350 0.76 -0.2 678,642 - ABID97_RS03350 0.76 -0.8 678,725 + ABID97_RS03350 0.86 -0.5 678,726 - ABID97_RS03350 0.86 +0.0 678,726 - ABID97_RS03350 0.86 +0.6 678,726 - ABID97_RS03350 0.86 -0.4 678,848 + +0.6 678,848 + -0.1 678,848 + +0.0 678,868 + -0.3 678,868 + +0.1 678,869 - +1.5 678,869 - +0.4 678,869 - +1.2 678,869 - +1.2 678,869 - -0.1 678,910 + -0.5 678,917 - -1.7
Or see this region's nucleotide sequence