Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03265 and ABID97_RS03270 are separated by 139 nucleotides ABID97_RS03270 and ABID97_RS03275 are separated by 0 nucleotides ABID97_RS03275 and ABID97_RS03280 overlap by 58 nucleotides
ABID97_RS03265: ABID97_RS03265 - dioxygenase, at 660,876 to 661,742
_RS03265
ABID97_RS03270: ABID97_RS03270 - LacI family DNA-binding transcriptional regulator, at 661,882 to 662,913
_RS03270
ABID97_RS03275: ABID97_RS03275 - hypothetical protein, at 662,914 to 663,429
_RS03275
ABID97_RS03280: ABID97_RS03280 - hypothetical protein, at 663,372 to 664,613
_RS03280
Position (kb) 661
662
663 Strain fitness (log2 ratio) -1
0
1
2 at 660.931 kb on + strand at 660.931 kb on + strand at 660.931 kb on + strand at 661.268 kb on - strand, within ABID97_RS03265 at 662.560 kb on + strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.708 kb on - strand, within ABID97_RS03270 at 663.033 kb on - strand, within ABID97_RS03275 at 663.033 kb on - strand, within ABID97_RS03275 at 663.378 kb on - strand at 663.820 kb on + strand, within ABID97_RS03280 at 663.863 kb on - strand, within ABID97_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 660,931 + -0.4 660,931 + -0.0 660,931 + +0.7 661,268 - ABID97_RS03265 0.45 -1.0 662,560 + ABID97_RS03270 0.66 +0.9 662,561 - ABID97_RS03270 0.66 +1.3 662,561 - ABID97_RS03270 0.66 +0.5 662,561 - ABID97_RS03270 0.66 +0.8 662,708 - ABID97_RS03270 0.80 +2.3 663,033 - ABID97_RS03275 0.23 -1.4 663,033 - ABID97_RS03275 0.23 +0.3 663,378 - +1.5 663,820 + ABID97_RS03280 0.36 +0.1 663,863 - ABID97_RS03280 0.40 -0.6
Or see this region's nucleotide sequence