Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03200 and ABID97_RS03205 are separated by 185 nucleotides ABID97_RS03205 and ABID97_RS03210 are separated by 73 nucleotides
ABID97_RS03200: ABID97_RS03200 - LysR substrate-binding domain-containing protein, at 648,680 to 649,600
_RS03200
ABID97_RS03205: ABID97_RS03205 - acyl-CoA dehydrogenase, at 649,786 to 650,985
_RS03205
ABID97_RS03210: ABID97_RS03210 - CaiB/BaiF CoA-transferase family protein, at 651,059 to 652,297
_RS03210
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 648.866 kb on + strand, within ABID97_RS03200 at 649.161 kb on + strand, within ABID97_RS03200 at 649.396 kb on - strand, within ABID97_RS03200 at 649.533 kb on + strand at 649.534 kb on - strand at 649.534 kb on - strand at 649.602 kb on + strand at 649.602 kb on + strand at 649.602 kb on + strand at 649.603 kb on - strand at 649.615 kb on + strand at 649.635 kb on + strand at 649.685 kb on + strand at 649.882 kb on + strand at 649.883 kb on - strand at 650.003 kb on - strand, within ABID97_RS03205 at 650.023 kb on + strand, within ABID97_RS03205 at 650.023 kb on + strand, within ABID97_RS03205 at 650.023 kb on + strand, within ABID97_RS03205 at 650.023 kb on + strand, within ABID97_RS03205 at 650.024 kb on - strand, within ABID97_RS03205 at 650.024 kb on - strand, within ABID97_RS03205 at 650.024 kb on - strand, within ABID97_RS03205 at 650.024 kb on - strand, within ABID97_RS03205 at 650.024 kb on - strand, within ABID97_RS03205 at 650.032 kb on + strand, within ABID97_RS03205 at 650.557 kb on + strand, within ABID97_RS03205 at 650.617 kb on + strand, within ABID97_RS03205 at 650.618 kb on - strand, within ABID97_RS03205 at 650.911 kb on + strand at 650.911 kb on + strand at 650.911 kb on + strand at 650.912 kb on - strand at 650.912 kb on - strand at 650.912 kb on - strand at 650.912 kb on - strand at 651.052 kb on + strand at 651.052 kb on + strand at 651.053 kb on - strand at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.449 kb on + strand, within ABID97_RS03210 at 651.450 kb on - strand, within ABID97_RS03210 at 651.623 kb on + strand, within ABID97_RS03210 at 651.624 kb on - strand, within ABID97_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 648,866 + ABID97_RS03200 0.20 -0.6 649,161 + ABID97_RS03200 0.52 -0.3 649,396 - ABID97_RS03200 0.78 +1.4 649,533 + -0.3 649,534 - -0.9 649,534 - -0.7 649,602 + -0.5 649,602 + -0.0 649,602 + -0.1 649,603 - -0.4 649,615 + -0.2 649,635 + -0.1 649,685 + +0.3 649,882 + -1.9 649,883 - -0.6 650,003 - ABID97_RS03205 0.18 +1.3 650,023 + ABID97_RS03205 0.20 -0.1 650,023 + ABID97_RS03205 0.20 -1.9 650,023 + ABID97_RS03205 0.20 -1.6 650,023 + ABID97_RS03205 0.20 -1.8 650,024 - ABID97_RS03205 0.20 +0.4 650,024 - ABID97_RS03205 0.20 -0.8 650,024 - ABID97_RS03205 0.20 -1.0 650,024 - ABID97_RS03205 0.20 -2.7 650,024 - ABID97_RS03205 0.20 -1.5 650,032 + ABID97_RS03205 0.20 +1.1 650,557 + ABID97_RS03205 0.64 -1.6 650,617 + ABID97_RS03205 0.69 +0.6 650,618 - ABID97_RS03205 0.69 +0.1 650,911 + -4.3 650,911 + -1.4 650,911 + -0.6 650,912 - -2.7 650,912 - -0.0 650,912 - -1.5 650,912 - +0.5 651,052 + +0.9 651,052 + +0.2 651,053 - -0.0 651,264 - ABID97_RS03210 0.17 -0.4 651,264 - ABID97_RS03210 0.17 +0.8 651,264 - ABID97_RS03210 0.17 +0.4 651,264 - ABID97_RS03210 0.17 -0.9 651,449 + ABID97_RS03210 0.31 -0.3 651,450 - ABID97_RS03210 0.32 -0.0 651,623 + ABID97_RS03210 0.46 -0.0 651,624 - ABID97_RS03210 0.46 +0.3
Or see this region's nucleotide sequence