Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02730 and ABID97_RS02735 are separated by 215 nucleotides ABID97_RS02735 and ABID97_RS02740 are separated by 77 nucleotides ABID97_RS02740 and ABID97_RS02745 are separated by 146 nucleotides
ABID97_RS02730: ABID97_RS02730 - endonuclease/exonuclease/phosphatase family protein, at 556,883 to 557,665
_RS02730
ABID97_RS02735: ABID97_RS02735 - serine/threonine protein kinase, at 557,881 to 558,309
_RS02735
ABID97_RS02740: ABID97_RS02740 - Spy/CpxP family protein refolding chaperone, at 558,387 to 558,947
_RS02740
ABID97_RS02745: ABID97_RS02745 - flavodoxin family protein, at 559,094 to 560,185
_RS02745
Position (kb) 557
558
559 Strain fitness (log2 ratio) -1
0
1
2 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.983 kb on + strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 556.984 kb on - strand, within ABID97_RS02730 at 557.328 kb on + strand, within ABID97_RS02730 at 557.329 kb on - strand, within ABID97_RS02730 at 557.382 kb on + strand, within ABID97_RS02730 at 557.383 kb on - strand, within ABID97_RS02730 at 557.439 kb on + strand, within ABID97_RS02730 at 557.439 kb on + strand, within ABID97_RS02730 at 557.680 kb on + strand at 557.680 kb on + strand at 557.680 kb on + strand at 557.680 kb on + strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.681 kb on - strand at 557.705 kb on + strand at 557.757 kb on - strand at 557.804 kb on + strand at 557.804 kb on + strand at 557.804 kb on + strand at 557.804 kb on + strand at 557.805 kb on - strand at 557.805 kb on - strand at 557.805 kb on - strand at 557.805 kb on - strand at 558.307 kb on + strand at 558.359 kb on - strand at 558.359 kb on - strand at 558.505 kb on + strand, within ABID97_RS02740 at 558.505 kb on + strand, within ABID97_RS02740 at 558.505 kb on + strand, within ABID97_RS02740 at 558.505 kb on + strand, within ABID97_RS02740 at 558.505 kb on + strand, within ABID97_RS02740 at 558.506 kb on - strand, within ABID97_RS02740 at 558.506 kb on - strand, within ABID97_RS02740 at 559.022 kb on + strand at 559.022 kb on + strand at 559.022 kb on + strand at 559.055 kb on - strand at 559.055 kb on - strand at 559.055 kb on - strand at 559.095 kb on + strand at 559.245 kb on + strand, within ABID97_RS02745 at 559.245 kb on + strand, within ABID97_RS02745 at 559.246 kb on - strand, within ABID97_RS02745 at 559.246 kb on - strand, within ABID97_RS02745 at 559.254 kb on + strand, within ABID97_RS02745 at 559.254 kb on + strand, within ABID97_RS02745 at 559.254 kb on + strand, within ABID97_RS02745 at 559.254 kb on + strand, within ABID97_RS02745 at 559.255 kb on - strand, within ABID97_RS02745 at 559.255 kb on - strand, within ABID97_RS02745 at 559.255 kb on - strand, within ABID97_RS02745 at 559.266 kb on + strand, within ABID97_RS02745 at 559.266 kb on + strand, within ABID97_RS02745 at 559.267 kb on - strand, within ABID97_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 556,983 + ABID97_RS02730 0.13 -0.1 556,983 + ABID97_RS02730 0.13 -0.8 556,983 + ABID97_RS02730 0.13 -0.9 556,983 + ABID97_RS02730 0.13 -0.1 556,983 + ABID97_RS02730 0.13 -0.3 556,983 + ABID97_RS02730 0.13 -0.4 556,983 + ABID97_RS02730 0.13 -1.1 556,983 + ABID97_RS02730 0.13 -0.3 556,984 - ABID97_RS02730 0.13 +0.6 556,984 - ABID97_RS02730 0.13 -0.3 556,984 - ABID97_RS02730 0.13 -0.8 556,984 - ABID97_RS02730 0.13 -0.1 556,984 - ABID97_RS02730 0.13 +0.4 556,984 - ABID97_RS02730 0.13 -0.7 557,328 + ABID97_RS02730 0.57 +1.1 557,329 - ABID97_RS02730 0.57 -0.0 557,382 + ABID97_RS02730 0.64 +1.0 557,383 - ABID97_RS02730 0.64 -0.5 557,439 + ABID97_RS02730 0.71 -0.2 557,439 + ABID97_RS02730 0.71 +1.5 557,680 + -0.6 557,680 + +1.0 557,680 + -0.6 557,680 + +0.1 557,681 - -0.8 557,681 - -0.2 557,681 - +0.2 557,681 - +0.9 557,681 - -0.6 557,681 - -0.0 557,681 - +0.3 557,681 - -0.7 557,681 - -0.5 557,705 + -0.3 557,757 - +2.7 557,804 + -0.3 557,804 + -0.4 557,804 + -0.9 557,804 + -0.7 557,805 - +1.4 557,805 - -0.8 557,805 - -0.8 557,805 - +1.1 558,307 + +0.3 558,359 - +0.5 558,359 - +0.1 558,505 + ABID97_RS02740 0.21 -0.6 558,505 + ABID97_RS02740 0.21 +1.5 558,505 + ABID97_RS02740 0.21 -0.0 558,505 + ABID97_RS02740 0.21 -0.7 558,505 + ABID97_RS02740 0.21 -0.3 558,506 - ABID97_RS02740 0.21 -0.1 558,506 - ABID97_RS02740 0.21 +0.1 559,022 + -0.5 559,022 + +1.1 559,022 + +2.1 559,055 - +0.8 559,055 - +0.6 559,055 - +1.3 559,095 + +0.7 559,245 + ABID97_RS02745 0.14 -0.1 559,245 + ABID97_RS02745 0.14 +2.1 559,246 - ABID97_RS02745 0.14 +0.6 559,246 - ABID97_RS02745 0.14 -0.9 559,254 + ABID97_RS02745 0.15 +0.4 559,254 + ABID97_RS02745 0.15 +0.1 559,254 + ABID97_RS02745 0.15 -0.4 559,254 + ABID97_RS02745 0.15 -0.6 559,255 - ABID97_RS02745 0.15 +0.7 559,255 - ABID97_RS02745 0.15 -0.6 559,255 - ABID97_RS02745 0.15 +0.6 559,266 + ABID97_RS02745 0.16 -0.4 559,266 + ABID97_RS02745 0.16 -0.6 559,267 - ABID97_RS02745 0.16 +0.6
Or see this region's nucleotide sequence