Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02725

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02720 and ABID97_RS02725 overlap by 4 nucleotidesABID97_RS02725 and ABID97_RS02730 are separated by 85 nucleotides ABID97_RS02720: ABID97_RS02720 - lysylphosphatidylglycerol synthase domain-containing protein, at 554,552 to 555,520 _RS02720 ABID97_RS02725: ABID97_RS02725 - cardiolipin synthase ClsB, at 555,517 to 556,797 _RS02725 ABID97_RS02730: ABID97_RS02730 - endonuclease/exonuclease/phosphatase family protein, at 556,883 to 557,665 _RS02730 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2at 554.544 kb on + strandat 554.553 kb on + strandat 554.607 kb on + strandat 554.608 kb on - strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.641 kb on - strandat 554.641 kb on - strandat 554.643 kb on + strandat 554.643 kb on + strandat 554.643 kb on + strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.655 kb on + strand, within ABID97_RS02720at 554.656 kb on - strand, within ABID97_RS02720at 554.656 kb on - strand, within ABID97_RS02720at 554.806 kb on - strand, within ABID97_RS02720at 554.971 kb on - strand, within ABID97_RS02720at 554.971 kb on - strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.991 kb on - strand, within ABID97_RS02720at 554.991 kb on - strand, within ABID97_RS02720at 555.090 kb on + strand, within ABID97_RS02720at 555.165 kb on + strand, within ABID97_RS02720at 555.165 kb on + strand, within ABID97_RS02720at 555.166 kb on - strand, within ABID97_RS02720at 555.166 kb on - strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.226 kb on - strand, within ABID97_RS02720at 555.226 kb on - strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720at 555.471 kb on - strandat 555.662 kb on + strand, within ABID97_RS02725at 555.971 kb on + strand, within ABID97_RS02725at 555.972 kb on - strand, within ABID97_RS02725at 555.972 kb on - strand, within ABID97_RS02725at 556.097 kb on + strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.148 kb on + strand, within ABID97_RS02725at 556.148 kb on + strand, within ABID97_RS02725at 556.352 kb on + strand, within ABID97_RS02725at 556.352 kb on + strand, within ABID97_RS02725at 556.400 kb on + strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.550 kb on + strand, within ABID97_RS02725at 556.550 kb on + strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.791 kb on + strandat 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 557.328 kb on + strand, within ABID97_RS02730at 557.329 kb on - strand, within ABID97_RS02730at 557.382 kb on + strand, within ABID97_RS02730at 557.383 kb on - strand, within ABID97_RS02730at 557.439 kb on + strand, within ABID97_RS02730at 557.439 kb on + strand, within ABID97_RS02730at 557.680 kb on + strandat 557.680 kb on + strandat 557.680 kb on + strandat 557.680 kb on + strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.705 kb on + strandat 557.757 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
554,544 + -0.0
554,553 + -2.0
554,607 + +0.7
554,608 - -1.4
554,640 + -0.9
554,640 + -0.0
554,640 + -0.8
554,640 + -0.3
554,640 + +0.6
554,640 + -1.0
554,641 - +0.5
554,641 - -0.1
554,643 + -0.9
554,643 + -0.3
554,643 + +0.1
554,644 - +0.8
554,644 - +1.3
554,644 - -0.7
554,644 - -0.5
554,655 + ABID97_RS02720 0.11 +0.6
554,656 - ABID97_RS02720 0.11 -0.4
554,656 - ABID97_RS02720 0.11 -0.0
554,806 - ABID97_RS02720 0.26 +0.9
554,971 - ABID97_RS02720 0.43 -0.5
554,971 - ABID97_RS02720 0.43 +0.8
554,990 + ABID97_RS02720 0.45 -0.1
554,990 + ABID97_RS02720 0.45 +0.2
554,990 + ABID97_RS02720 0.45 -0.1
554,991 - ABID97_RS02720 0.45 +0.4
554,991 - ABID97_RS02720 0.45 -0.8
555,090 + ABID97_RS02720 0.56 -0.8
555,165 + ABID97_RS02720 0.63 -0.5
555,165 + ABID97_RS02720 0.63 -0.1
555,166 - ABID97_RS02720 0.63 +0.3
555,166 - ABID97_RS02720 0.63 -0.8
555,225 + ABID97_RS02720 0.69 -0.5
555,225 + ABID97_RS02720 0.69 -0.9
555,225 + ABID97_RS02720 0.69 +0.4
555,226 - ABID97_RS02720 0.70 -0.8
555,226 - ABID97_RS02720 0.70 -0.4
555,300 + ABID97_RS02720 0.77 -0.3
555,300 + ABID97_RS02720 0.77 +0.1
555,300 + ABID97_RS02720 0.77 +0.5
555,300 + ABID97_RS02720 0.77 +1.5
555,300 + ABID97_RS02720 0.77 -0.1
555,300 + ABID97_RS02720 0.77 -0.3
555,300 + ABID97_RS02720 0.77 -0.4
555,301 - ABID97_RS02720 0.77 -0.2
555,301 - ABID97_RS02720 0.77 +0.0
555,301 - ABID97_RS02720 0.77 +0.0
555,301 - ABID97_RS02720 0.77 -0.6
555,301 - ABID97_RS02720 0.77 +0.1
555,301 - ABID97_RS02720 0.77 -1.1
555,301 - ABID97_RS02720 0.77 -0.5
555,301 - ABID97_RS02720 0.77 -0.1
555,301 - ABID97_RS02720 0.77 +1.1
555,301 - ABID97_RS02720 0.77 +0.1
555,301 - ABID97_RS02720 0.77 -0.4
555,309 + ABID97_RS02720 0.78 +0.7
555,309 + ABID97_RS02720 0.78 -0.5
555,309 + ABID97_RS02720 0.78 +1.1
555,310 - ABID97_RS02720 0.78 -0.4
555,310 - ABID97_RS02720 0.78 -0.0
555,310 - ABID97_RS02720 0.78 -0.2
555,471 - +0.6
555,662 + ABID97_RS02725 0.11 +0.5
555,971 + ABID97_RS02725 0.35 -0.6
555,972 - ABID97_RS02725 0.36 -0.3
555,972 - ABID97_RS02725 0.36 -0.5
556,097 + ABID97_RS02725 0.45 +0.6
556,098 - ABID97_RS02725 0.45 +0.4
556,098 - ABID97_RS02725 0.45 +0.1
556,098 - ABID97_RS02725 0.45 +0.8
556,098 - ABID97_RS02725 0.45 +0.2
556,098 - ABID97_RS02725 0.45 +0.3
556,148 + ABID97_RS02725 0.49 -0.1
556,148 + ABID97_RS02725 0.49 -0.1
556,352 + ABID97_RS02725 0.65 -0.1
556,352 + ABID97_RS02725 0.65 +0.9
556,400 + ABID97_RS02725 0.69 +0.7
556,401 - ABID97_RS02725 0.69 -0.0
556,401 - ABID97_RS02725 0.69 -0.1
556,401 - ABID97_RS02725 0.69 +0.1
556,550 + ABID97_RS02725 0.81 -0.2
556,550 + ABID97_RS02725 0.81 -0.7
556,551 - ABID97_RS02725 0.81 +0.1
556,551 - ABID97_RS02725 0.81 -1.4
556,551 - ABID97_RS02725 0.81 -0.3
556,791 + +0.1
556,983 + ABID97_RS02730 0.13 -0.1
556,983 + ABID97_RS02730 0.13 -0.8
556,983 + ABID97_RS02730 0.13 -0.9
556,983 + ABID97_RS02730 0.13 -0.1
556,983 + ABID97_RS02730 0.13 -0.3
556,983 + ABID97_RS02730 0.13 -0.4
556,983 + ABID97_RS02730 0.13 -1.1
556,983 + ABID97_RS02730 0.13 -0.3
556,984 - ABID97_RS02730 0.13 +0.6
556,984 - ABID97_RS02730 0.13 -0.3
556,984 - ABID97_RS02730 0.13 -0.8
556,984 - ABID97_RS02730 0.13 -0.1
556,984 - ABID97_RS02730 0.13 +0.4
556,984 - ABID97_RS02730 0.13 -0.7
557,328 + ABID97_RS02730 0.57 +1.1
557,329 - ABID97_RS02730 0.57 -0.0
557,382 + ABID97_RS02730 0.64 +1.0
557,383 - ABID97_RS02730 0.64 -0.5
557,439 + ABID97_RS02730 0.71 -0.2
557,439 + ABID97_RS02730 0.71 +1.5
557,680 + -0.6
557,680 + +1.0
557,680 + -0.6
557,680 + +0.1
557,681 - -0.8
557,681 - -0.2
557,681 - +0.2
557,681 - +0.9
557,681 - -0.6
557,681 - -0.0
557,681 - +0.3
557,681 - -0.7
557,681 - -0.5
557,705 + -0.3
557,757 - +2.7

Or see this region's nucleotide sequence