Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02515

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02510 and ABID97_RS02515 are separated by 179 nucleotidesABID97_RS02515 and ABID97_RS02520 are separated by 50 nucleotidesABID97_RS02520 and ABID97_RS02525 are separated by 267 nucleotides ABID97_RS02510: ABID97_RS02510 - NADP-dependent malic enzyme, at 511,418 to 513,760 _RS02510 ABID97_RS02515: ABID97_RS02515 - ribonuclease domain-containing protein, at 513,940 to 514,353 _RS02515 ABID97_RS02520: ABID97_RS02520 - barstar family protein, at 514,404 to 514,829 _RS02520 ABID97_RS02525: ABID97_RS02525 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 515,097 to 515,867 _RS02525 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 512.945 kb on + strand, within ABID97_RS02510at 512.945 kb on + strand, within ABID97_RS02510at 512.945 kb on + strand, within ABID97_RS02510at 512.946 kb on - strand, within ABID97_RS02510at 512.946 kb on - strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strand, within ABID97_RS02510at 512.999 kb on + strandat 512.999 kb on + strand, within ABID97_RS02510at 513.000 kb on - strand, within ABID97_RS02510at 513.000 kb on - strand, within ABID97_RS02510at 513.000 kb on - strand, within ABID97_RS02510at 513.000 kb on - strand, within ABID97_RS02510at 513.000 kb on - strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.155 kb on + strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.156 kb on - strand, within ABID97_RS02510at 513.221 kb on + strand, within ABID97_RS02510at 513.221 kb on + strand, within ABID97_RS02510at 513.222 kb on - strand, within ABID97_RS02510at 513.222 kb on - strand, within ABID97_RS02510at 513.222 kb on - strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.287 kb on + strand, within ABID97_RS02510at 513.288 kb on - strand, within ABID97_RS02510at 513.288 kb on - strand, within ABID97_RS02510at 513.288 kb on - strand, within ABID97_RS02510at 513.570 kb on + strandat 513.571 kb on - strandat 513.571 kb on - strandat 513.602 kb on + strandat 513.602 kb on + strandat 513.603 kb on - strandat 513.613 kb on + strandat 513.758 kb on + strandat 513.949 kb on + strandat 513.950 kb on - strandat 513.975 kb on + strandat 513.975 kb on + strandat 513.975 kb on + strandat 513.976 kb on - strandat 513.976 kb on - strandat 514.074 kb on - strand, within ABID97_RS02515at 514.074 kb on - strand, within ABID97_RS02515at 514.095 kb on - strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.111 kb on + strand, within ABID97_RS02515at 514.112 kb on - strand, within ABID97_RS02515at 514.112 kb on - strand, within ABID97_RS02515at 514.112 kb on - strand, within ABID97_RS02515at 514.112 kb on - strand, within ABID97_RS02515at 514.112 kb on - strand, within ABID97_RS02515at 514.163 kb on + strand, within ABID97_RS02515at 514.163 kb on + strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.164 kb on - strand, within ABID97_RS02515at 514.219 kb on + strand, within ABID97_RS02515at 514.220 kb on - strand, within ABID97_RS02515at 514.220 kb on - strand, within ABID97_RS02515at 514.309 kb on + strand, within ABID97_RS02515at 514.309 kb on + strand, within ABID97_RS02515at 514.409 kb on + strandat 514.436 kb on - strandat 514.436 kb on - strandat 514.436 kb on - strandat 514.436 kb on - strandat 514.436 kb on - strandat 514.436 kb on - strandat 514.827 kb on + strandat 514.828 kb on - strandat 515.031 kb on - strandat 515.068 kb on + strandat 515.098 kb on + strandat 515.137 kb on + strandat 515.137 kb on + strandat 515.137 kb on + strandat 515.138 kb on - strandat 515.138 kb on - strandat 515.138 kb on - strandat 515.138 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
512,945 + ABID97_RS02510 0.65 -1.0
512,945 + ABID97_RS02510 0.65 -0.7
512,945 + ABID97_RS02510 0.65 -0.6
512,946 - ABID97_RS02510 0.65 -0.5
512,946 - ABID97_RS02510 0.65 +1.0
512,999 + ABID97_RS02510 0.67 +0.7
512,999 + ABID97_RS02510 0.67 -0.9
512,999 + ABID97_RS02510 0.67 -0.7
512,999 + ABID97_RS02510 0.67 -1.2
512,999 + ABID97_RS02510 0.67 -0.6
512,999 + ABID97_RS02510 0.67 +0.8
512,999 + ABID97_RS02510 0.67 +1.0
512,999 + +4.3
512,999 + ABID97_RS02510 0.67 -0.5
513,000 - ABID97_RS02510 0.68 -0.4
513,000 - ABID97_RS02510 0.68 -1.1
513,000 - ABID97_RS02510 0.68 +0.4
513,000 - ABID97_RS02510 0.68 +0.5
513,000 - ABID97_RS02510 0.68 +0.1
513,155 + ABID97_RS02510 0.74 -1.4
513,155 + ABID97_RS02510 0.74 +1.5
513,155 + ABID97_RS02510 0.74 -1.4
513,155 + ABID97_RS02510 0.74 +0.1
513,155 + ABID97_RS02510 0.74 -1.0
513,155 + ABID97_RS02510 0.74 -0.2
513,155 + ABID97_RS02510 0.74 -2.0
513,155 + ABID97_RS02510 0.74 -0.1
513,155 + ABID97_RS02510 0.74 -0.1
513,156 - ABID97_RS02510 0.74 -0.0
513,156 - ABID97_RS02510 0.74 +0.6
513,156 - ABID97_RS02510 0.74 +0.7
513,156 - ABID97_RS02510 0.74 -0.8
513,156 - ABID97_RS02510 0.74 +0.7
513,156 - ABID97_RS02510 0.74 +0.7
513,156 - ABID97_RS02510 0.74 -1.8
513,156 - ABID97_RS02510 0.74 -0.9
513,221 + ABID97_RS02510 0.77 -1.2
513,221 + ABID97_RS02510 0.77 +0.9
513,222 - ABID97_RS02510 0.77 -0.0
513,222 - ABID97_RS02510 0.77 -1.1
513,222 - ABID97_RS02510 0.77 -0.6
513,287 + ABID97_RS02510 0.80 -0.5
513,287 + ABID97_RS02510 0.80 -1.6
513,287 + ABID97_RS02510 0.80 -0.3
513,287 + ABID97_RS02510 0.80 -1.7
513,287 + ABID97_RS02510 0.80 -1.2
513,287 + ABID97_RS02510 0.80 -0.3
513,287 + ABID97_RS02510 0.80 -2.0
513,287 + ABID97_RS02510 0.80 -0.7
513,288 - ABID97_RS02510 0.80 -0.4
513,288 - ABID97_RS02510 0.80 +0.7
513,288 - ABID97_RS02510 0.80 -0.5
513,570 + -0.2
513,571 - +0.4
513,571 - +0.6
513,602 + +1.0
513,602 + -0.0
513,603 - -0.7
513,613 + -2.4
513,758 + -0.7
513,949 + +2.9
513,950 - +3.4
513,975 + +1.4
513,975 + +2.5
513,975 + +1.9
513,976 - +2.2
513,976 - +3.6
514,074 - ABID97_RS02515 0.32 +2.7
514,074 - ABID97_RS02515 0.32 +3.8
514,095 - ABID97_RS02515 0.37 +2.5
514,111 + ABID97_RS02515 0.41 +1.0
514,111 + ABID97_RS02515 0.41 +0.4
514,111 + ABID97_RS02515 0.41 +0.2
514,111 + ABID97_RS02515 0.41 +1.5
514,111 + ABID97_RS02515 0.41 +1.2
514,111 + ABID97_RS02515 0.41 +0.5
514,111 + ABID97_RS02515 0.41 -1.2
514,111 + ABID97_RS02515 0.41 -0.1
514,112 - ABID97_RS02515 0.42 +3.8
514,112 - ABID97_RS02515 0.42 +3.3
514,112 - ABID97_RS02515 0.42 +3.8
514,112 - ABID97_RS02515 0.42 +2.7
514,112 - ABID97_RS02515 0.42 +3.4
514,163 + ABID97_RS02515 0.54 -0.6
514,163 + ABID97_RS02515 0.54 +0.1
514,164 - ABID97_RS02515 0.54 +2.3
514,164 - ABID97_RS02515 0.54 +2.7
514,164 - ABID97_RS02515 0.54 +1.9
514,164 - ABID97_RS02515 0.54 +2.0
514,164 - ABID97_RS02515 0.54 +2.5
514,164 - ABID97_RS02515 0.54 +2.5
514,219 + ABID97_RS02515 0.67 +0.4
514,220 - ABID97_RS02515 0.68 +3.3
514,220 - ABID97_RS02515 0.68 +2.6
514,309 + ABID97_RS02515 0.89 -1.2
514,309 + ABID97_RS02515 0.89 -1.2
514,409 + +2.1
514,436 - +4.9
514,436 - +3.8
514,436 - +3.4
514,436 - +4.2
514,436 - +4.0
514,436 - +4.4
514,827 + -2.0
514,828 - +0.0
515,031 - +0.2
515,068 + -0.1
515,098 + -0.1
515,137 + -0.5
515,137 + -2.2
515,137 + +1.0
515,138 - +1.0
515,138 - +0.4
515,138 - -0.5
515,138 - -1.0

Or see this region's nucleotide sequence