Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02460 and ABID97_RS02465 are separated by 25 nucleotides ABID97_RS02465 and ABID97_RS02470 are separated by 76 nucleotides
ABID97_RS02460: ABID97_RS02460 - aminopeptidase P N-terminal domain-containing protein, at 493,121 to 494,515
_RS02460
ABID97_RS02465: ABID97_RS02465 - esterase-like activity of phytase family protein, at 494,541 to 495,893
_RS02465
ABID97_RS02470: ABID97_RS02470 - penicillin-binding protein 1C, at 495,970 to 498,273
_RS02470
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 493.931 kb on + strand, within ABID97_RS02460 at 493.942 kb on + strand, within ABID97_RS02460 at 493.997 kb on + strand, within ABID97_RS02460 at 493.998 kb on - strand, within ABID97_RS02460 at 494.183 kb on + strand, within ABID97_RS02460 at 494.183 kb on + strand, within ABID97_RS02460 at 494.183 kb on + strand, within ABID97_RS02460 at 494.183 kb on + strand, within ABID97_RS02460 at 494.183 kb on + strand, within ABID97_RS02460 at 494.184 kb on + strand, within ABID97_RS02460 at 494.184 kb on - strand, within ABID97_RS02460 at 494.184 kb on - strand, within ABID97_RS02460 at 494.184 kb on - strand, within ABID97_RS02460 at 494.237 kb on + strand, within ABID97_RS02460 at 494.237 kb on + strand, within ABID97_RS02460 at 494.237 kb on + strand, within ABID97_RS02460 at 494.238 kb on - strand, within ABID97_RS02460 at 494.238 kb on - strand, within ABID97_RS02460 at 494.238 kb on - strand, within ABID97_RS02460 at 494.238 kb on - strand, within ABID97_RS02460 at 494.238 kb on - strand, within ABID97_RS02460 at 494.363 kb on + strand, within ABID97_RS02460 at 494.363 kb on + strand, within ABID97_RS02460 at 494.363 kb on + strand, within ABID97_RS02460 at 494.364 kb on - strand, within ABID97_RS02460 at 494.364 kb on - strand, within ABID97_RS02460 at 494.364 kb on - strand, within ABID97_RS02460 at 494.542 kb on + strand at 494.542 kb on + strand at 494.542 kb on + strand at 494.543 kb on - strand at 494.584 kb on + strand at 494.827 kb on + strand, within ABID97_RS02465 at 494.827 kb on + strand, within ABID97_RS02465 at 494.828 kb on - strand, within ABID97_RS02465 at 494.828 kb on - strand, within ABID97_RS02465 at 494.904 kb on - strand, within ABID97_RS02465 at 495.080 kb on - strand, within ABID97_RS02465 at 495.124 kb on + strand, within ABID97_RS02465 at 495.124 kb on + strand, within ABID97_RS02465 at 495.125 kb on - strand, within ABID97_RS02465 at 495.508 kb on + strand, within ABID97_RS02465 at 495.508 kb on + strand, within ABID97_RS02465 at 495.509 kb on - strand, within ABID97_RS02465 at 495.509 kb on - strand, within ABID97_RS02465 at 495.520 kb on + strand, within ABID97_RS02465 at 495.520 kb on + strand, within ABID97_RS02465 at 495.521 kb on - strand, within ABID97_RS02465 at 496.040 kb on + strand at 496.040 kb on + strand at 496.041 kb on - strand at 496.130 kb on + strand at 496.130 kb on + strand at 496.131 kb on - strand at 496.412 kb on - strand, within ABID97_RS02470 at 496.889 kb on + strand, within ABID97_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 493,931 + ABID97_RS02460 0.58 -1.3 493,942 + ABID97_RS02460 0.59 -1.8 493,997 + ABID97_RS02460 0.63 -0.6 493,998 - ABID97_RS02460 0.63 -1.3 494,183 + ABID97_RS02460 0.76 -1.1 494,183 + ABID97_RS02460 0.76 -1.4 494,183 + ABID97_RS02460 0.76 -0.5 494,183 + ABID97_RS02460 0.76 -2.0 494,183 + ABID97_RS02460 0.76 -2.9 494,184 + ABID97_RS02460 0.76 +0.1 494,184 - ABID97_RS02460 0.76 -0.6 494,184 - ABID97_RS02460 0.76 -1.2 494,184 - ABID97_RS02460 0.76 -1.3 494,237 + ABID97_RS02460 0.80 -0.8 494,237 + ABID97_RS02460 0.80 -0.8 494,237 + ABID97_RS02460 0.80 -1.0 494,238 - ABID97_RS02460 0.80 -0.7 494,238 - ABID97_RS02460 0.80 -0.4 494,238 - ABID97_RS02460 0.80 -0.6 494,238 - ABID97_RS02460 0.80 +0.3 494,238 - ABID97_RS02460 0.80 -0.1 494,363 + ABID97_RS02460 0.89 -2.2 494,363 + ABID97_RS02460 0.89 -2.1 494,363 + ABID97_RS02460 0.89 -2.2 494,364 - ABID97_RS02460 0.89 +0.9 494,364 - ABID97_RS02460 0.89 -0.7 494,364 - ABID97_RS02460 0.89 -0.3 494,542 + -0.2 494,542 + +0.1 494,542 + -0.0 494,543 - +0.3 494,584 + -0.7 494,827 + ABID97_RS02465 0.21 +0.0 494,827 + ABID97_RS02465 0.21 +0.8 494,828 - ABID97_RS02465 0.21 +1.3 494,828 - ABID97_RS02465 0.21 +0.3 494,904 - ABID97_RS02465 0.27 +1.4 495,080 - ABID97_RS02465 0.40 -0.5 495,124 + ABID97_RS02465 0.43 -0.8 495,124 + ABID97_RS02465 0.43 -0.5 495,125 - ABID97_RS02465 0.43 -0.2 495,508 + ABID97_RS02465 0.71 +0.5 495,508 + ABID97_RS02465 0.71 -0.6 495,509 - ABID97_RS02465 0.72 -0.4 495,509 - ABID97_RS02465 0.72 -0.3 495,520 + ABID97_RS02465 0.72 +1.4 495,520 + ABID97_RS02465 0.72 +0.3 495,521 - ABID97_RS02465 0.72 -0.2 496,040 + +0.3 496,040 + +0.9 496,041 - -0.3 496,130 + -0.4 496,130 + -0.0 496,131 - -0.5 496,412 - ABID97_RS02470 0.19 +0.3 496,889 + ABID97_RS02470 0.40 -0.5
Or see this region's nucleotide sequence