Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02410

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02405 and ABID97_RS02410 are separated by 14 nucleotidesABID97_RS02410 and ABID97_RS02415 are separated by 145 nucleotides ABID97_RS02405: ABID97_RS02405 - pirin family protein, at 483,915 to 485,075 _RS02405 ABID97_RS02410: ABID97_RS02410 - YciI family protein, at 485,090 to 485,380 _RS02410 ABID97_RS02415: ABID97_RS02415 - M4 family metallopeptidase, at 485,526 to 486,596 _RS02415 Position (kb) 485 486Strain fitness (log2 ratio) -1 0 1 2 3at 484.101 kb on + strand, within ABID97_RS02405at 484.101 kb on + strandat 484.101 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.905 kb on + strand, within ABID97_RS02405at 484.906 kb on - strand, within ABID97_RS02405at 484.960 kb on - strandat 484.960 kb on - strandat 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.293 kb on - strand, within ABID97_RS02410at 485.357 kb on - strandat 485.357 kb on - strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.417 kb on - strandat 485.417 kb on - strandat 485.452 kb on - strandat 485.471 kb on + strandat 485.472 kb on - strandat 485.496 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.575 kb on - strandat 485.575 kb on - strandat 485.838 kb on + strand, within ABID97_RS02415at 485.838 kb on + strand, within ABID97_RS02415at 485.838 kb on + strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.844 kb on + strand, within ABID97_RS02415at 485.845 kb on - strand, within ABID97_RS02415at 485.859 kb on + strand, within ABID97_RS02415at 485.859 kb on + strand, within ABID97_RS02415at 485.860 kb on - strand, within ABID97_RS02415at 485.860 kb on - strand, within ABID97_RS02415at 485.868 kb on + strand, within ABID97_RS02415at 485.868 kb on + strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.946 kb on + strand, within ABID97_RS02415at 486.087 kb on + strand, within ABID97_RS02415at 486.264 kb on + strand, within ABID97_RS02415

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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484,101 + ABID97_RS02405 0.16 -0.0
484,101 + +2.9
484,101 + ABID97_RS02405 0.16 -0.7
484,209 + ABID97_RS02405 0.25 +0.0
484,209 + ABID97_RS02405 0.25 -0.4
484,209 + ABID97_RS02405 0.25 -0.2
484,209 + ABID97_RS02405 0.25 -0.2
484,209 + ABID97_RS02405 0.25 -0.1
484,209 + ABID97_RS02405 0.25 -0.1
484,209 + ABID97_RS02405 0.25 +0.8
484,209 + ABID97_RS02405 0.25 +1.3
484,210 - ABID97_RS02405 0.25 +0.2
484,210 - ABID97_RS02405 0.25 +0.3
484,210 - ABID97_RS02405 0.25 -0.3
484,210 - ABID97_RS02405 0.25 +0.1
484,210 - ABID97_RS02405 0.25 +0.2
484,210 - ABID97_RS02405 0.25 +0.5
484,291 + ABID97_RS02405 0.32 -0.4
484,291 + ABID97_RS02405 0.32 -0.0
484,291 + ABID97_RS02405 0.32 -0.5
484,291 + ABID97_RS02405 0.32 +0.4
484,291 + ABID97_RS02405 0.32 -0.3
484,292 - ABID97_RS02405 0.32 -0.9
484,292 - ABID97_RS02405 0.32 -0.1
484,292 - ABID97_RS02405 0.32 -0.0
484,740 + ABID97_RS02405 0.71 -0.6
484,740 + ABID97_RS02405 0.71 +0.2
484,740 + ABID97_RS02405 0.71 +0.0
484,740 + ABID97_RS02405 0.71 +0.8
484,740 + ABID97_RS02405 0.71 -0.3
484,740 + ABID97_RS02405 0.71 -0.2
484,740 + ABID97_RS02405 0.71 +1.9
484,741 - ABID97_RS02405 0.71 -0.1
484,741 - ABID97_RS02405 0.71 +3.5
484,741 - ABID97_RS02405 0.71 -0.3
484,905 + ABID97_RS02405 0.85 +1.8
484,906 - ABID97_RS02405 0.85 +2.9
484,960 - +0.0
484,960 - +0.4
485,292 + ABID97_RS02410 0.69 -0.5
485,292 + ABID97_RS02410 0.69 -0.6
485,292 + ABID97_RS02410 0.69 -0.6
485,292 + ABID97_RS02410 0.69 -0.5
485,292 + ABID97_RS02410 0.69 -0.5
485,292 + ABID97_RS02410 0.69 +0.2
485,293 - ABID97_RS02410 0.70 -1.2
485,357 - +0.2
485,357 - -0.4
485,358 + +0.6
485,358 + +0.0
485,358 + -0.3
485,358 + -0.6
485,358 + +0.6
485,358 + -0.2
485,358 + -0.3
485,358 + +0.1
485,358 + -0.0
485,358 + +0.4
485,358 + -0.4
485,358 + -0.6
485,359 - -0.6
485,359 - +0.0
485,359 - -0.1
485,359 - -0.2
485,359 - -0.0
485,359 - -0.2
485,359 - -0.6
485,417 - +0.3
485,417 - +1.8
485,452 - +0.5
485,471 + -0.6
485,472 - -0.2
485,496 + +3.7
485,574 + -0.7
485,574 + +1.7
485,574 + +1.2
485,574 + -1.4
485,575 - +0.0
485,575 - -0.8
485,838 + ABID97_RS02415 0.29 -0.0
485,838 + ABID97_RS02415 0.29 -1.0
485,838 + ABID97_RS02415 0.29 -0.2
485,839 - ABID97_RS02415 0.29 -0.6
485,839 - ABID97_RS02415 0.29 -0.1
485,839 - ABID97_RS02415 0.29 +0.6
485,839 - ABID97_RS02415 0.29 -0.3
485,839 - ABID97_RS02415 0.29 -0.5
485,839 - ABID97_RS02415 0.29 +0.2
485,839 - ABID97_RS02415 0.29 -0.4
485,839 - ABID97_RS02415 0.29 -0.3
485,844 + ABID97_RS02415 0.30 -0.1
485,845 - ABID97_RS02415 0.30 +0.3
485,859 + ABID97_RS02415 0.31 -0.4
485,859 + ABID97_RS02415 0.31 +0.2
485,860 - ABID97_RS02415 0.31 +0.0
485,860 - ABID97_RS02415 0.31 -0.4
485,868 + ABID97_RS02415 0.32 -0.2
485,868 + ABID97_RS02415 0.32 -0.6
485,869 - ABID97_RS02415 0.32 -0.8
485,869 - ABID97_RS02415 0.32 +1.5
485,869 - ABID97_RS02415 0.32 -0.3
485,935 - ABID97_RS02415 0.38 +0.1
485,935 - ABID97_RS02415 0.38 -0.8
485,935 - ABID97_RS02415 0.38 -0.3
485,946 + ABID97_RS02415 0.39 -0.2
486,087 + ABID97_RS02415 0.52 +0.1
486,264 + ABID97_RS02415 0.69 -0.7

Or see this region's nucleotide sequence