Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02395 and ABID97_RS02400 are separated by 105 nucleotides ABID97_RS02400 and ABID97_RS02405 are separated by 79 nucleotides ABID97_RS02405 and ABID97_RS02410 are separated by 14 nucleotides ABID97_RS02410 and ABID97_RS02415 are separated by 145 nucleotides
ABID97_RS02395: ABID97_RS02395 - amidase family protein, at 481,919 to 483,307
_RS02395
ABID97_RS02400: ABID97_RS02400 - VOC family protein, at 483,413 to 483,835
_RS02400
ABID97_RS02405: ABID97_RS02405 - pirin family protein, at 483,915 to 485,075
_RS02405
ABID97_RS02410: ABID97_RS02410 - YciI family protein, at 485,090 to 485,380
_RS02410
ABID97_RS02415: ABID97_RS02415 - M4 family metallopeptidase, at 485,526 to 486,596
_RS02415
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -1
0
1
2
3 at 483.036 kb on + strand, within ABID97_RS02395 at 483.036 kb on + strand, within ABID97_RS02395 at 483.341 kb on - strand at 483.493 kb on + strand, within ABID97_RS02400 at 483.493 kb on + strand, within ABID97_RS02400 at 483.493 kb on + strand, within ABID97_RS02400 at 483.493 kb on + strand, within ABID97_RS02400 at 483.493 kb on + strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.494 kb on - strand, within ABID97_RS02400 at 483.735 kb on - strand, within ABID97_RS02400 at 483.746 kb on + strand, within ABID97_RS02400 at 483.746 kb on + strand, within ABID97_RS02400 at 483.746 kb on + strand, within ABID97_RS02400 at 483.747 kb on - strand, within ABID97_RS02400 at 483.747 kb on - strand, within ABID97_RS02400 at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.794 kb on + strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.795 kb on - strand at 483.935 kb on + strand at 483.989 kb on + strand at 483.989 kb on + strand at 483.990 kb on - strand at 484.001 kb on + strand at 484.001 kb on + strand at 484.001 kb on + strand at 484.001 kb on + strand at 484.001 kb on + strand at 484.002 kb on - strand at 484.002 kb on - strand at 484.101 kb on + strand, within ABID97_RS02405 at 484.101 kb on + strand at 484.101 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.209 kb on + strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.210 kb on - strand, within ABID97_RS02405 at 484.291 kb on + strand, within ABID97_RS02405 at 484.291 kb on + strand, within ABID97_RS02405 at 484.291 kb on + strand, within ABID97_RS02405 at 484.291 kb on + strand, within ABID97_RS02405 at 484.291 kb on + strand, within ABID97_RS02405 at 484.292 kb on - strand, within ABID97_RS02405 at 484.292 kb on - strand, within ABID97_RS02405 at 484.292 kb on - strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.740 kb on + strand, within ABID97_RS02405 at 484.741 kb on - strand, within ABID97_RS02405 at 484.741 kb on - strand, within ABID97_RS02405 at 484.741 kb on - strand, within ABID97_RS02405 at 484.905 kb on + strand, within ABID97_RS02405 at 484.906 kb on - strand, within ABID97_RS02405 at 484.960 kb on - strand at 484.960 kb on - strand at 485.292 kb on + strand, within ABID97_RS02410 at 485.292 kb on + strand, within ABID97_RS02410 at 485.292 kb on + strand, within ABID97_RS02410 at 485.292 kb on + strand, within ABID97_RS02410 at 485.292 kb on + strand, within ABID97_RS02410 at 485.292 kb on + strand, within ABID97_RS02410 at 485.293 kb on - strand, within ABID97_RS02410 at 485.357 kb on - strand at 485.357 kb on - strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.358 kb on + strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.359 kb on - strand at 485.417 kb on - strand at 485.417 kb on - strand at 485.452 kb on - strand at 485.471 kb on + strand at 485.472 kb on - strand at 485.496 kb on + strand at 485.574 kb on + strand at 485.574 kb on + strand at 485.574 kb on + strand at 485.574 kb on + strand at 485.575 kb on - strand at 485.575 kb on - strand at 485.838 kb on + strand, within ABID97_RS02415 at 485.838 kb on + strand, within ABID97_RS02415 at 485.838 kb on + strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.844 kb on + strand, within ABID97_RS02415 at 485.845 kb on - strand, within ABID97_RS02415 at 485.859 kb on + strand, within ABID97_RS02415 at 485.859 kb on + strand, within ABID97_RS02415 at 485.860 kb on - strand, within ABID97_RS02415 at 485.860 kb on - strand, within ABID97_RS02415 at 485.868 kb on + strand, within ABID97_RS02415 at 485.868 kb on + strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.946 kb on + strand, within ABID97_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 483,036 + ABID97_RS02395 0.80 -0.2 483,036 + ABID97_RS02395 0.80 +0.2 483,341 - +0.1 483,493 + ABID97_RS02400 0.19 -0.7 483,493 + ABID97_RS02400 0.19 -0.2 483,493 + ABID97_RS02400 0.19 -0.2 483,493 + ABID97_RS02400 0.19 -0.4 483,493 + ABID97_RS02400 0.19 +0.1 483,494 - ABID97_RS02400 0.19 +0.8 483,494 - ABID97_RS02400 0.19 +0.2 483,494 - ABID97_RS02400 0.19 -0.0 483,494 - ABID97_RS02400 0.19 +0.9 483,494 - ABID97_RS02400 0.19 -0.7 483,494 - ABID97_RS02400 0.19 -0.1 483,494 - ABID97_RS02400 0.19 -0.5 483,735 - ABID97_RS02400 0.76 -0.2 483,746 + ABID97_RS02400 0.79 -0.3 483,746 + ABID97_RS02400 0.79 +0.2 483,746 + ABID97_RS02400 0.79 +0.3 483,747 - ABID97_RS02400 0.79 -0.6 483,747 - ABID97_RS02400 0.79 +1.6 483,794 + -0.5 483,794 + +0.5 483,794 + -0.7 483,794 + -0.2 483,794 + -0.1 483,794 + +0.9 483,794 + -0.2 483,794 + -0.1 483,794 + -0.1 483,794 + -0.7 483,794 + -0.6 483,794 + -0.0 483,794 + +0.3 483,795 - -0.1 483,795 - +0.4 483,795 - +0.7 483,795 - -1.4 483,795 - -0.1 483,795 - -0.3 483,795 - -0.2 483,795 - +1.1 483,795 - -0.1 483,795 - -0.4 483,795 - -0.2 483,795 - -0.6 483,795 - -0.3 483,795 - -0.9 483,795 - -1.0 483,795 - +0.9 483,795 - +0.5 483,795 - -1.3 483,935 + -0.1 483,989 + -0.6 483,989 + +0.3 483,990 - -0.1 484,001 + +0.2 484,001 + -0.9 484,001 + -0.8 484,001 + +0.7 484,001 + -0.2 484,002 - -0.7 484,002 - +0.2 484,101 + ABID97_RS02405 0.16 -0.0 484,101 + +2.9 484,101 + ABID97_RS02405 0.16 -0.7 484,209 + ABID97_RS02405 0.25 +0.0 484,209 + ABID97_RS02405 0.25 -0.4 484,209 + ABID97_RS02405 0.25 -0.2 484,209 + ABID97_RS02405 0.25 -0.2 484,209 + ABID97_RS02405 0.25 -0.1 484,209 + ABID97_RS02405 0.25 -0.1 484,209 + ABID97_RS02405 0.25 +0.8 484,209 + ABID97_RS02405 0.25 +1.3 484,210 - ABID97_RS02405 0.25 +0.2 484,210 - ABID97_RS02405 0.25 +0.3 484,210 - ABID97_RS02405 0.25 -0.3 484,210 - ABID97_RS02405 0.25 +0.1 484,210 - ABID97_RS02405 0.25 +0.2 484,210 - ABID97_RS02405 0.25 +0.5 484,291 + ABID97_RS02405 0.32 -0.4 484,291 + ABID97_RS02405 0.32 -0.0 484,291 + ABID97_RS02405 0.32 -0.5 484,291 + ABID97_RS02405 0.32 +0.4 484,291 + ABID97_RS02405 0.32 -0.3 484,292 - ABID97_RS02405 0.32 -0.9 484,292 - ABID97_RS02405 0.32 -0.1 484,292 - ABID97_RS02405 0.32 -0.0 484,740 + ABID97_RS02405 0.71 -0.6 484,740 + ABID97_RS02405 0.71 +0.2 484,740 + ABID97_RS02405 0.71 +0.0 484,740 + ABID97_RS02405 0.71 +0.8 484,740 + ABID97_RS02405 0.71 -0.3 484,740 + ABID97_RS02405 0.71 -0.2 484,740 + ABID97_RS02405 0.71 +1.9 484,741 - ABID97_RS02405 0.71 -0.1 484,741 - ABID97_RS02405 0.71 +3.5 484,741 - ABID97_RS02405 0.71 -0.3 484,905 + ABID97_RS02405 0.85 +1.8 484,906 - ABID97_RS02405 0.85 +2.9 484,960 - +0.0 484,960 - +0.4 485,292 + ABID97_RS02410 0.69 -0.5 485,292 + ABID97_RS02410 0.69 -0.6 485,292 + ABID97_RS02410 0.69 -0.6 485,292 + ABID97_RS02410 0.69 -0.5 485,292 + ABID97_RS02410 0.69 -0.5 485,292 + ABID97_RS02410 0.69 +0.2 485,293 - ABID97_RS02410 0.70 -1.2 485,357 - +0.2 485,357 - -0.4 485,358 + +0.6 485,358 + +0.0 485,358 + -0.3 485,358 + -0.6 485,358 + +0.6 485,358 + -0.2 485,358 + -0.3 485,358 + +0.1 485,358 + -0.0 485,358 + +0.4 485,358 + -0.4 485,358 + -0.6 485,359 - -0.6 485,359 - +0.0 485,359 - -0.1 485,359 - -0.2 485,359 - -0.0 485,359 - -0.2 485,359 - -0.6 485,417 - +0.3 485,417 - +1.8 485,452 - +0.5 485,471 + -0.6 485,472 - -0.2 485,496 + +3.7 485,574 + -0.7 485,574 + +1.7 485,574 + +1.2 485,574 + -1.4 485,575 - +0.0 485,575 - -0.8 485,838 + ABID97_RS02415 0.29 -0.0 485,838 + ABID97_RS02415 0.29 -1.0 485,838 + ABID97_RS02415 0.29 -0.2 485,839 - ABID97_RS02415 0.29 -0.6 485,839 - ABID97_RS02415 0.29 -0.1 485,839 - ABID97_RS02415 0.29 +0.6 485,839 - ABID97_RS02415 0.29 -0.3 485,839 - ABID97_RS02415 0.29 -0.5 485,839 - ABID97_RS02415 0.29 +0.2 485,839 - ABID97_RS02415 0.29 -0.4 485,839 - ABID97_RS02415 0.29 -0.3 485,844 + ABID97_RS02415 0.30 -0.1 485,845 - ABID97_RS02415 0.30 +0.3 485,859 + ABID97_RS02415 0.31 -0.4 485,859 + ABID97_RS02415 0.31 +0.2 485,860 - ABID97_RS02415 0.31 +0.0 485,860 - ABID97_RS02415 0.31 -0.4 485,868 + ABID97_RS02415 0.32 -0.2 485,868 + ABID97_RS02415 0.32 -0.6 485,869 - ABID97_RS02415 0.32 -0.8 485,869 - ABID97_RS02415 0.32 +1.5 485,869 - ABID97_RS02415 0.32 -0.3 485,935 - ABID97_RS02415 0.38 +0.1 485,935 - ABID97_RS02415 0.38 -0.8 485,935 - ABID97_RS02415 0.38 -0.3 485,946 + ABID97_RS02415 0.39 -0.2
Or see this region's nucleotide sequence