Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02245

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02235 and ABID97_RS02240 are separated by 93 nucleotidesABID97_RS02240 and ABID97_RS02245 are separated by 10 nucleotidesABID97_RS02245 and ABID97_RS02250 are separated by 205 nucleotides ABID97_RS02235: ABID97_RS02235 - TerC family protein, at 452,657 to 453,343 _RS02235 ABID97_RS02240: ABID97_RS02240 - succinate--CoA ligase subunit alpha, at 453,437 to 454,330 _RS02240 ABID97_RS02245: ABID97_RS02245 - ADP-forming succinate--CoA ligase subunit beta, at 454,341 to 455,507 _RS02245 ABID97_RS02250: ABID97_RS02250 - N-acetyl-gamma-glutamyl-phosphate reductase, at 455,713 to 456,636 _RS02250 Position (kb) 454 455 456Strain fitness (log2 ratio) -2 -1 0 1 2at 453.365 kb on + strandat 453.366 kb on - strandat 453.366 kb on - strandat 453.366 kb on - strandat 453.404 kb on - strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.438 kb on + strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 453.439 kb on - strandat 454.342 kb on + strandat 454.343 kb on - strandat 454.343 kb on - strandat 455.630 kb on + strandat 455.630 kb on + strandat 455.630 kb on + strandat 455.630 kb on + strandat 455.651 kb on + strandat 455.652 kb on - strandat 455.652 kb on - strandat 455.675 kb on + strandat 455.675 kb on + strandat 455.675 kb on + strandat 455.675 kb on + strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.680 kb on - strandat 455.680 kb on - strandat 455.689 kb on + strandat 455.689 kb on + strandat 455.689 kb on + strandat 455.698 kb on + strandat 455.704 kb on + strandat 455.704 kb on + strandat 455.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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453,365 + -0.3
453,366 - -0.8
453,366 - +0.8
453,366 - -0.9
453,404 - -0.5
453,438 + +1.0
453,438 + +0.8
453,438 + +0.1
453,438 + +0.8
453,438 + +0.2
453,438 + +0.1
453,438 + +0.1
453,438 + +0.3
453,439 - +0.1
453,439 - -0.5
453,439 - +0.3
453,439 - +0.1
453,439 - -0.1
453,439 - -0.5
453,439 - -0.6
453,439 - -0.6
454,342 + +0.9
454,343 - +1.9
454,343 - +1.1
455,630 + +1.1
455,630 + +0.2
455,630 + +0.3
455,630 + +0.1
455,651 + +0.5
455,652 - -0.1
455,652 - +0.9
455,675 + -0.0
455,675 + -0.1
455,675 + -0.6
455,675 + +0.3
455,676 - -1.8
455,676 - -0.2
455,676 - +0.2
455,676 - +1.2
455,676 - +0.4
455,680 - -0.7
455,680 - +0.6
455,689 + -0.8
455,689 + -0.7
455,689 + -0.2
455,698 + +0.8
455,704 + -0.3
455,704 + -0.1
455,704 + -1.2

Or see this region's nucleotide sequence