Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02105

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02095 and ABID97_RS02100 are separated by 54 nucleotidesABID97_RS02100 and ABID97_RS02105 are separated by 18 nucleotidesABID97_RS02105 and ABID97_RS02110 are separated by 128 nucleotidesABID97_RS02110 and ABID97_RS02115 overlap by 4 nucleotides ABID97_RS02095: ABID97_RS02095 - M48 family metalloprotease, at 419,825 to 421,390 _RS02095 ABID97_RS02100: ABID97_RS02100 - cyclic pyranopterin monophosphate synthase MoaC, at 421,445 to 421,927 _RS02100 ABID97_RS02105: ABID97_RS02105 - Wzy polymerase domain-containing protein, at 421,946 to 423,682 _RS02105 ABID97_RS02110: ABID97_RS02110 - type IV pilus modification protein PilV, at 423,811 to 424,398 _RS02110 ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426 _RS02115 Position (kb) 421 422 423 424Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 421.000 kb on - strand, within ABID97_RS02095at 421.000 kb on - strand, within ABID97_RS02095at 421.000 kb on - strand, within ABID97_RS02095at 421.140 kb on + strand, within ABID97_RS02095at 421.140 kb on + strand, within ABID97_RS02095at 421.167 kb on + strand, within ABID97_RS02095at 421.167 kb on + strand, within ABID97_RS02095at 421.168 kb on - strand, within ABID97_RS02095at 421.168 kb on - strand, within ABID97_RS02095at 421.168 kb on - strand, within ABID97_RS02095at 421.182 kb on + strand, within ABID97_RS02095at 421.311 kb on - strandat 421.414 kb on + strandat 421.414 kb on + strandat 421.414 kb on + strandat 421.414 kb on + strandat 421.414 kb on + strandat 421.415 kb on - strandat 421.708 kb on + strand, within ABID97_RS02100at 421.829 kb on + strand, within ABID97_RS02100at 421.829 kb on + strand, within ABID97_RS02100at 421.829 kb on + strand, within ABID97_RS02100at 421.830 kb on - strand, within ABID97_RS02100at 421.830 kb on - strand, within ABID97_RS02100at 421.830 kb on - strand, within ABID97_RS02100at 421.913 kb on + strandat 421.913 kb on + strandat 421.913 kb on + strandat 421.913 kb on + strandat 421.914 kb on - strandat 421.914 kb on - strandat 421.914 kb on - strandat 421.914 kb on - strandat 421.947 kb on + strandat 421.948 kb on - strandat 422.244 kb on + strand, within ABID97_RS02105at 422.244 kb on + strand, within ABID97_RS02105at 422.245 kb on - strand, within ABID97_RS02105at 422.245 kb on - strand, within ABID97_RS02105at 422.245 kb on - strand, within ABID97_RS02105at 422.274 kb on + strand, within ABID97_RS02105at 422.274 kb on + strand, within ABID97_RS02105at 422.295 kb on + strand, within ABID97_RS02105at 422.296 kb on - strand, within ABID97_RS02105at 422.296 kb on - strand, within ABID97_RS02105at 422.296 kb on - strand, within ABID97_RS02105at 422.311 kb on - strand, within ABID97_RS02105at 422.469 kb on + strand, within ABID97_RS02105at 422.481 kb on + strand, within ABID97_RS02105at 422.691 kb on + strand, within ABID97_RS02105at 422.692 kb on - strand, within ABID97_RS02105at 422.692 kb on - strand, within ABID97_RS02105at 422.703 kb on + strand, within ABID97_RS02105at 422.704 kb on - strand, within ABID97_RS02105at 422.704 kb on - strand, within ABID97_RS02105at 422.887 kb on - strand, within ABID97_RS02105at 423.125 kb on + strand, within ABID97_RS02105at 423.189 kb on + strand, within ABID97_RS02105at 423.190 kb on - strand, within ABID97_RS02105at 423.246 kb on + strand, within ABID97_RS02105at 423.246 kb on + strand, within ABID97_RS02105at 423.246 kb on + strand, within ABID97_RS02105at 423.247 kb on - strand, within ABID97_RS02105at 423.250 kb on - strand, within ABID97_RS02105at 423.250 kb on - strand, within ABID97_RS02105at 423.319 kb on + strand, within ABID97_RS02105at 423.319 kb on + strand, within ABID97_RS02105at 423.721 kb on - strandat 423.879 kb on - strand, within ABID97_RS02110at 423.879 kb on - strand, within ABID97_RS02110at 423.917 kb on + strand, within ABID97_RS02110at 423.918 kb on - strand, within ABID97_RS02110at 423.918 kb on - strand, within ABID97_RS02110at 423.980 kb on + strand, within ABID97_RS02110at 423.980 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.229 kb on - strand, within ABID97_RS02110

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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421,000 - ABID97_RS02095 0.75 -0.2
421,000 - ABID97_RS02095 0.75 +1.1
421,000 - ABID97_RS02095 0.75 +1.6
421,140 + ABID97_RS02095 0.84 +0.7
421,140 + ABID97_RS02095 0.84 -0.3
421,167 + ABID97_RS02095 0.86 +0.2
421,167 + ABID97_RS02095 0.86 -0.2
421,168 - ABID97_RS02095 0.86 -0.5
421,168 - ABID97_RS02095 0.86 -0.1
421,168 - ABID97_RS02095 0.86 -0.3
421,182 + ABID97_RS02095 0.87 -0.5
421,311 - -0.7
421,414 + -0.7
421,414 + +0.3
421,414 + +1.5
421,414 + -0.8
421,414 + -0.3
421,415 - +0.1
421,708 + ABID97_RS02100 0.54 -1.6
421,829 + ABID97_RS02100 0.80 -2.5
421,829 + ABID97_RS02100 0.80 +1.1
421,829 + ABID97_RS02100 0.80 -1.0
421,830 - ABID97_RS02100 0.80 -0.3
421,830 - ABID97_RS02100 0.80 +1.6
421,830 - ABID97_RS02100 0.80 -1.1
421,913 + +0.9
421,913 + -0.7
421,913 + -1.4
421,913 + +0.2
421,914 - -0.5
421,914 - -0.5
421,914 - +0.2
421,914 - -0.7
421,947 + +0.7
421,948 - -1.9
422,244 + ABID97_RS02105 0.17 -1.1
422,244 + ABID97_RS02105 0.17 -0.8
422,245 - ABID97_RS02105 0.17 -1.0
422,245 - ABID97_RS02105 0.17 +1.0
422,245 - ABID97_RS02105 0.17 -0.5
422,274 + ABID97_RS02105 0.19 -0.2
422,274 + ABID97_RS02105 0.19 -0.3
422,295 + ABID97_RS02105 0.20 +0.8
422,296 - ABID97_RS02105 0.20 +0.4
422,296 - ABID97_RS02105 0.20 +0.2
422,296 - ABID97_RS02105 0.20 +0.7
422,311 - ABID97_RS02105 0.21 -0.5
422,469 + ABID97_RS02105 0.30 -0.2
422,481 + ABID97_RS02105 0.31 -0.8
422,691 + ABID97_RS02105 0.43 +0.8
422,692 - ABID97_RS02105 0.43 -0.2
422,692 - ABID97_RS02105 0.43 +0.9
422,703 + ABID97_RS02105 0.44 -1.9
422,704 - ABID97_RS02105 0.44 -1.0
422,704 - ABID97_RS02105 0.44 -2.4
422,887 - ABID97_RS02105 0.54 -0.4
423,125 + ABID97_RS02105 0.68 -0.3
423,189 + ABID97_RS02105 0.72 -0.3
423,190 - ABID97_RS02105 0.72 +0.1
423,246 + ABID97_RS02105 0.75 +0.3
423,246 + ABID97_RS02105 0.75 +0.2
423,246 + ABID97_RS02105 0.75 -0.0
423,247 - ABID97_RS02105 0.75 +0.5
423,250 - ABID97_RS02105 0.75 -0.6
423,250 - ABID97_RS02105 0.75 -0.4
423,319 + ABID97_RS02105 0.79 -0.4
423,319 + ABID97_RS02105 0.79 -0.6
423,721 - -1.3
423,879 - ABID97_RS02110 0.12 -0.7
423,879 - ABID97_RS02110 0.12 -0.3
423,917 + ABID97_RS02110 0.18 +0.9
423,918 - ABID97_RS02110 0.18 -3.8
423,918 - ABID97_RS02110 0.18 +1.9
423,980 + ABID97_RS02110 0.29 -4.4
423,980 + ABID97_RS02110 0.29 -1.6
424,096 + ABID97_RS02110 0.48 -2.1
424,096 + ABID97_RS02110 0.48 -1.8
424,096 + ABID97_RS02110 0.48 -3.2
424,096 + ABID97_RS02110 0.48 -1.7
424,096 + ABID97_RS02110 0.48 -4.8
424,096 + ABID97_RS02110 0.48 -2.8
424,096 + ABID97_RS02110 0.48 -1.4
424,096 + ABID97_RS02110 0.48 -1.9
424,096 + ABID97_RS02110 0.48 -1.6
424,096 + ABID97_RS02110 0.48 -3.0
424,096 + ABID97_RS02110 0.48 -3.0
424,097 - ABID97_RS02110 0.49 +0.6
424,097 - ABID97_RS02110 0.49 -2.9
424,097 - ABID97_RS02110 0.49 -1.5
424,097 - ABID97_RS02110 0.49 -1.6
424,097 - ABID97_RS02110 0.49 -2.8
424,097 - ABID97_RS02110 0.49 -1.5
424,097 - ABID97_RS02110 0.49 -1.3
424,097 - ABID97_RS02110 0.49 -1.2
424,097 - ABID97_RS02110 0.49 -2.2
424,097 - ABID97_RS02110 0.49 -4.1
424,097 - ABID97_RS02110 0.49 -0.9
424,229 - ABID97_RS02110 0.71 -2.4

Or see this region's nucleotide sequence