Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02080 and ABID97_RS02085 are separated by 79 nucleotides ABID97_RS02085 and ABID97_RS02090 are separated by 86 nucleotides ABID97_RS02090 and ABID97_RS02095 are separated by 21 nucleotides
ABID97_RS02080: ABID97_RS02080 - TerC family protein, at 418,073 to 418,819
_RS02080
ABID97_RS02085: ABID97_RS02085 - hypothetical protein, at 418,899 to 419,363
_RS02085
ABID97_RS02090: ABID97_RS02090 - phage holin family protein, at 419,450 to 419,803
_RS02090
ABID97_RS02095: ABID97_RS02095 - M48 family metalloprotease, at 419,825 to 421,390
_RS02095
Position (kb) 419
420 Strain fitness (log2 ratio) -1
0
1
2 at 418.818 kb on - strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.877 kb on + strand at 418.878 kb on - strand at 418.878 kb on - strand at 418.878 kb on - strand at 418.878 kb on - strand at 418.881 kb on + strand at 418.881 kb on + strand at 418.882 kb on - strand at 418.882 kb on - strand at 418.918 kb on - strand at 418.918 kb on - strand at 419.361 kb on + strand at 419.361 kb on + strand at 419.362 kb on - strand at 419.362 kb on - strand at 419.510 kb on + strand, within ABID97_RS02090 at 419.744 kb on + strand, within ABID97_RS02090 at 419.744 kb on + strand, within ABID97_RS02090 at 419.744 kb on + strand, within ABID97_RS02090 at 419.744 kb on + strand, within ABID97_RS02090 at 419.745 kb on - strand, within ABID97_RS02090 at 419.745 kb on - strand, within ABID97_RS02090 at 419.826 kb on + strand at 419.827 kb on - strand at 419.827 kb on - strand at 419.908 kb on - strand at 420.048 kb on + strand, within ABID97_RS02095 at 420.049 kb on - strand, within ABID97_RS02095 at 420.603 kb on + strand, within ABID97_RS02095 at 420.604 kb on - strand, within ABID97_RS02095 at 420.609 kb on + strand, within ABID97_RS02095 at 420.610 kb on - strand, within ABID97_RS02095 at 420.610 kb on - strand, within ABID97_RS02095 at 420.610 kb on - strand, within ABID97_RS02095 at 420.639 kb on + strand, within ABID97_RS02095 at 420.639 kb on + strand, within ABID97_RS02095
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 418,818 - +1.6 418,877 + -0.9 418,877 + +0.7 418,877 + -0.5 418,877 + -1.4 418,877 + +0.5 418,877 + +0.4 418,877 + +0.1 418,877 + +1.0 418,877 + -0.4 418,878 - +2.7 418,878 - +1.9 418,878 - -0.2 418,878 - -0.1 418,881 + -0.2 418,881 + -0.3 418,882 - -0.4 418,882 - -0.9 418,918 - -0.0 418,918 - +0.5 419,361 + -0.5 419,361 + -1.1 419,362 - +0.1 419,362 - -0.4 419,510 + ABID97_RS02090 0.17 +1.1 419,744 + ABID97_RS02090 0.83 +1.1 419,744 + ABID97_RS02090 0.83 -1.6 419,744 + ABID97_RS02090 0.83 -0.8 419,744 + ABID97_RS02090 0.83 -0.1 419,745 - ABID97_RS02090 0.83 -0.8 419,745 - ABID97_RS02090 0.83 -0.7 419,826 + +0.1 419,827 - -0.1 419,827 - -0.3 419,908 - -1.2 420,048 + ABID97_RS02095 0.14 +1.1 420,049 - ABID97_RS02095 0.14 -0.4 420,603 + ABID97_RS02095 0.50 -0.5 420,604 - ABID97_RS02095 0.50 -0.2 420,609 + ABID97_RS02095 0.50 -0.6 420,610 - ABID97_RS02095 0.50 -0.7 420,610 - ABID97_RS02095 0.50 +0.2 420,610 - ABID97_RS02095 0.50 +0.7 420,639 + ABID97_RS02095 0.52 +0.5 420,639 + ABID97_RS02095 0.52 -0.2
Or see this region's nucleotide sequence