Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02035

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02030 and ABID97_RS02035 are separated by 78 nucleotidesABID97_RS02035 and ABID97_RS02040 are separated by 252 nucleotides ABID97_RS02030: ABID97_RS02030 - RNA polymerase sigma-70 factor, at 407,749 to 408,630 _RS02030 ABID97_RS02035: ABID97_RS02035 - ferritin-like domain-containing protein, at 408,709 to 409,566 _RS02035 ABID97_RS02040: ABID97_RS02040 - glutathione peroxidase, at 409,819 to 410,331 _RS02040 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1 2 3at 407.750 kb on + strandat 407.751 kb on - strandat 407.751 kb on - strandat 407.751 kb on - strandat 407.954 kb on + strand, within ABID97_RS02030at 407.954 kb on + strand, within ABID97_RS02030at 407.954 kb on + strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 408.233 kb on + strand, within ABID97_RS02030at 408.233 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.691 kb on - strandat 408.691 kb on - strandat 408.722 kb on + strandat 408.723 kb on - strandat 408.723 kb on - strandat 409.073 kb on + strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.308 kb on - strand, within ABID97_RS02035at 409.578 kb on + strandat 409.640 kb on + strandat 409.640 kb on + strandat 409.641 kb on - strandat 409.641 kb on - strandat 409.673 kb on - strandat 409.725 kb on + strandat 409.921 kb on + strand, within ABID97_RS02040at 409.922 kb on - strand, within ABID97_RS02040at 409.922 kb on - strand, within ABID97_RS02040at 409.971 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.982 kb on - strand, within ABID97_RS02040at 409.982 kb on - strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.221 kb on + strand, within ABID97_RS02040at 410.221 kb on + strand, within ABID97_RS02040at 410.222 kb on - strand, within ABID97_RS02040at 410.222 kb on - strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.228 kb on - strand, within ABID97_RS02040at 410.228 kb on - strand, within ABID97_RS02040at 410.365 kb on + strandat 410.365 kb on + strandat 410.366 kb on - strandat 410.405 kb on - strandat 410.544 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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407,750 + +0.0
407,751 - -0.4
407,751 - -0.5
407,751 - +0.6
407,954 + ABID97_RS02030 0.23 +1.0
407,954 + ABID97_RS02030 0.23 +0.4
407,954 + ABID97_RS02030 0.23 +1.6
407,955 - ABID97_RS02030 0.23 +0.9
407,955 - ABID97_RS02030 0.23 +3.7
407,955 - ABID97_RS02030 0.23 +1.8
408,233 + ABID97_RS02030 0.55 -0.2
408,233 + ABID97_RS02030 0.55 -0.3
408,401 + ABID97_RS02030 0.74 +1.8
408,401 + ABID97_RS02030 0.74 -0.4
408,401 + ABID97_RS02030 0.74 -0.9
408,401 + ABID97_RS02030 0.74 -0.6
408,401 + ABID97_RS02030 0.74 -0.3
408,401 + ABID97_RS02030 0.74 -0.4
408,401 + ABID97_RS02030 0.74 -0.1
408,402 - ABID97_RS02030 0.74 -0.7
408,402 - ABID97_RS02030 0.74 -1.1
408,402 - ABID97_RS02030 0.74 -1.5
408,402 - ABID97_RS02030 0.74 -0.2
408,402 - ABID97_RS02030 0.74 -0.2
408,402 - ABID97_RS02030 0.74 -0.5
408,402 - ABID97_RS02030 0.74 -0.6
408,402 - ABID97_RS02030 0.74 -0.9
408,691 - +1.7
408,691 - +0.6
408,722 + -0.3
408,723 - -0.2
408,723 - -0.3
409,073 + ABID97_RS02035 0.42 -0.6
409,074 - ABID97_RS02035 0.43 -0.4
409,074 - ABID97_RS02035 0.43 +1.0
409,074 - ABID97_RS02035 0.43 +0.5
409,074 - ABID97_RS02035 0.43 -0.7
409,074 - ABID97_RS02035 0.43 -0.2
409,082 + ABID97_RS02035 0.43 -0.5
409,082 + ABID97_RS02035 0.43 -1.1
409,083 - ABID97_RS02035 0.44 -0.4
409,083 - ABID97_RS02035 0.44 -0.1
409,124 + ABID97_RS02035 0.48 +0.5
409,124 + ABID97_RS02035 0.48 -1.3
409,124 + ABID97_RS02035 0.48 -1.2
409,124 + ABID97_RS02035 0.48 +0.2
409,124 + ABID97_RS02035 0.48 +0.4
409,125 - ABID97_RS02035 0.48 +2.3
409,125 - ABID97_RS02035 0.48 -0.9
409,125 - ABID97_RS02035 0.48 -0.4
409,125 - ABID97_RS02035 0.48 -0.3
409,125 - ABID97_RS02035 0.48 -1.0
409,125 - ABID97_RS02035 0.48 -0.1
409,125 - ABID97_RS02035 0.48 -1.0
409,125 - ABID97_RS02035 0.48 -0.1
409,308 - ABID97_RS02035 0.70 +0.1
409,578 + -0.4
409,640 + -0.2
409,640 + -2.1
409,641 - -0.6
409,641 - -0.1
409,673 - +0.8
409,725 + +0.2
409,921 + ABID97_RS02040 0.20 -0.6
409,922 - ABID97_RS02040 0.20 -0.3
409,922 - ABID97_RS02040 0.20 +0.3
409,971 + ABID97_RS02040 0.30 -0.9
409,981 + ABID97_RS02040 0.32 +0.3
409,981 + ABID97_RS02040 0.32 +0.9
409,981 + ABID97_RS02040 0.32 -0.4
409,982 - ABID97_RS02040 0.32 +0.3
409,982 - ABID97_RS02040 0.32 +0.1
410,011 + ABID97_RS02040 0.37 -0.0
410,011 + ABID97_RS02040 0.37 -1.2
410,011 + ABID97_RS02040 0.37 -0.1
410,012 - ABID97_RS02040 0.38 -0.5
410,012 - ABID97_RS02040 0.38 -0.2
410,012 - ABID97_RS02040 0.38 +1.4
410,012 - ABID97_RS02040 0.38 +0.6
410,221 + ABID97_RS02040 0.78 +0.6
410,221 + ABID97_RS02040 0.78 -0.6
410,222 - ABID97_RS02040 0.79 -0.2
410,222 - ABID97_RS02040 0.79 -0.7
410,227 + ABID97_RS02040 0.80 -0.2
410,227 + ABID97_RS02040 0.80 -0.4
410,227 + ABID97_RS02040 0.80 +0.7
410,227 + ABID97_RS02040 0.80 -0.2
410,228 - ABID97_RS02040 0.80 +1.1
410,228 - ABID97_RS02040 0.80 +0.3
410,365 + -0.7
410,365 + -1.1
410,366 - +2.1
410,405 - +0.9
410,544 + +1.9

Or see this region's nucleotide sequence