Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01810

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS01800 and ABID97_RS01805 overlap by 4 nucleotidesABID97_RS01805 and ABID97_RS01810 overlap by 1 nucleotidesABID97_RS01810 and ABID97_RS01815 overlap by 4 nucleotidesABID97_RS01815 and ABID97_RS01820 overlap by 4 nucleotides ABID97_RS01800: ABID97_RS01800 - AzlD domain-containing protein, at 353,151 to 353,489 _RS01800 ABID97_RS01805: ABID97_RS01805 - AzlC family ABC transporter permease, at 353,486 to 354,226 _RS01805 ABID97_RS01810: ABID97_RS01810 - methionyl-tRNA formyltransferase, at 354,226 to 355,191 _RS01810 ABID97_RS01815: ABID97_RS01815 - hypothetical protein, at 355,188 to 355,694 _RS01815 ABID97_RS01820: ABID97_RS01820 - peptide deformylase, at 355,691 to 356,212 _RS01820 Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 353.230 kb on + strand, within ABID97_RS01800at 353.230 kb on + strand, within ABID97_RS01800at 353.231 kb on - strand, within ABID97_RS01800at 353.231 kb on - strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.234 kb on - strand, within ABID97_RS01800at 353.234 kb on - strand, within ABID97_RS01800at 353.236 kb on + strand, within ABID97_RS01800at 353.260 kb on + strand, within ABID97_RS01800at 353.260 kb on + strand, within ABID97_RS01800at 353.354 kb on - strand, within ABID97_RS01800at 353.598 kb on + strand, within ABID97_RS01805at 353.598 kb on + strand, within ABID97_RS01805at 353.599 kb on - strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.788 kb on - strand, within ABID97_RS01805at 353.802 kb on + strand, within ABID97_RS01805at 353.803 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.871 kb on + strand, within ABID97_RS01805at 353.892 kb on + strand, within ABID97_RS01805at 353.935 kb on - strand, within ABID97_RS01805at 354.060 kb on + strand, within ABID97_RS01805at 354.060 kb on + strand, within ABID97_RS01805at 354.061 kb on - strand, within ABID97_RS01805at 355.232 kb on - strandat 355.232 kb on - strandat 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.261 kb on + strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.262 kb on - strand, within ABID97_RS01815at 355.265 kb on + strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.266 kb on - strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.267 kb on + strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.268 kb on - strand, within ABID97_RS01815at 355.297 kb on + strand, within ABID97_RS01815at 355.297 kb on + strand, within ABID97_RS01815at 355.298 kb on - strand, within ABID97_RS01815at 355.298 kb on - strand, within ABID97_RS01815at 355.348 kb on + strand, within ABID97_RS01815at 355.349 kb on - strand, within ABID97_RS01815at 355.360 kb on + strand, within ABID97_RS01815at 355.360 kb on + strand, within ABID97_RS01815at 355.511 kb on - strand, within ABID97_RS01815at 355.774 kb on - strand, within ABID97_RS01820at 355.774 kb on - strand, within ABID97_RS01820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
353,230 + ABID97_RS01800 0.23 -0.8
353,230 + ABID97_RS01800 0.23 -0.2
353,231 - ABID97_RS01800 0.24 -0.0
353,231 - ABID97_RS01800 0.24 -0.6
353,233 + ABID97_RS01800 0.24 -0.6
353,233 + ABID97_RS01800 0.24 -0.6
353,233 + ABID97_RS01800 0.24 -0.7
353,234 - ABID97_RS01800 0.24 +0.1
353,234 - ABID97_RS01800 0.24 +0.7
353,236 + ABID97_RS01800 0.25 +0.3
353,260 + ABID97_RS01800 0.32 +0.2
353,260 + ABID97_RS01800 0.32 -0.3
353,354 - ABID97_RS01800 0.60 +0.6
353,598 + ABID97_RS01805 0.15 +0.0
353,598 + ABID97_RS01805 0.15 -1.9
353,599 - ABID97_RS01805 0.15 -0.5
353,787 + ABID97_RS01805 0.41 -1.7
353,787 + ABID97_RS01805 0.41 +1.3
353,787 + ABID97_RS01805 0.41 -0.1
353,788 - ABID97_RS01805 0.41 -0.4
353,802 + ABID97_RS01805 0.43 +5.4
353,803 - ABID97_RS01805 0.43 +0.1
353,851 - ABID97_RS01805 0.49 -0.4
353,851 - ABID97_RS01805 0.49 -0.7
353,851 - ABID97_RS01805 0.49 -0.7
353,871 + ABID97_RS01805 0.52 +0.3
353,892 + ABID97_RS01805 0.55 -0.4
353,935 - ABID97_RS01805 0.61 -0.8
354,060 + ABID97_RS01805 0.77 +0.2
354,060 + ABID97_RS01805 0.77 -0.3
354,061 - ABID97_RS01805 0.78 +1.1
355,232 - +2.8
355,232 - -0.6
355,261 + ABID97_RS01815 0.14 +0.0
355,261 + ABID97_RS01815 0.14 -0.1
355,261 + ABID97_RS01815 0.14 +0.3
355,261 + ABID97_RS01815 0.14 +1.6
355,261 + ABID97_RS01815 0.14 +0.6
355,261 + ABID97_RS01815 0.14 +0.6
355,261 + ABID97_RS01815 0.14 -0.0
355,261 + ABID97_RS01815 0.14 +1.6
355,262 - ABID97_RS01815 0.15 -0.3
355,262 - ABID97_RS01815 0.15 -1.1
355,262 - ABID97_RS01815 0.15 +0.6
355,265 + ABID97_RS01815 0.15 +1.7
355,266 - ABID97_RS01815 0.15 -0.7
355,266 - ABID97_RS01815 0.15 -0.1
355,266 - ABID97_RS01815 0.15 -1.2
355,266 - ABID97_RS01815 0.15 -0.9
355,267 + ABID97_RS01815 0.16 +0.1
355,267 + ABID97_RS01815 0.16 -0.1
355,267 + ABID97_RS01815 0.16 -0.1
355,267 + ABID97_RS01815 0.16 +0.5
355,267 + ABID97_RS01815 0.16 +1.8
355,267 + ABID97_RS01815 0.16 +0.5
355,267 + ABID97_RS01815 0.16 +0.3
355,267 + ABID97_RS01815 0.16 +0.2
355,267 + ABID97_RS01815 0.16 +0.7
355,267 + ABID97_RS01815 0.16 -0.2
355,267 + ABID97_RS01815 0.16 -0.0
355,268 - ABID97_RS01815 0.16 -0.2
355,268 - ABID97_RS01815 0.16 -0.1
355,268 - ABID97_RS01815 0.16 -0.4
355,268 - ABID97_RS01815 0.16 +0.3
355,268 - ABID97_RS01815 0.16 -0.5
355,268 - ABID97_RS01815 0.16 +0.4
355,268 - ABID97_RS01815 0.16 -0.3
355,268 - ABID97_RS01815 0.16 +0.8
355,297 + ABID97_RS01815 0.21 +0.3
355,297 + ABID97_RS01815 0.21 +0.5
355,298 - ABID97_RS01815 0.22 -0.4
355,298 - ABID97_RS01815 0.22 -0.4
355,348 + ABID97_RS01815 0.32 +0.4
355,349 - ABID97_RS01815 0.32 -0.4
355,360 + ABID97_RS01815 0.34 +2.0
355,360 + ABID97_RS01815 0.34 +0.7
355,511 - ABID97_RS01815 0.64 -0.1
355,774 - ABID97_RS01820 0.16 +0.8
355,774 - ABID97_RS01820 0.16 +0.2

Or see this region's nucleotide sequence