Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01405 and ABID97_RS01410 are separated by 63 nucleotides ABID97_RS01410 and ABID97_RS01415 are separated by 71 nucleotides ABID97_RS01415 and ABID97_RS01420 are separated by 12 nucleotides
ABID97_RS01405: ABID97_RS01405 - LysR family transcriptional regulator, at 283,803 to 284,729
_RS01405
ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806
_RS01410
ABID97_RS01415: ABID97_RS01415 - DUF1840 domain-containing protein, at 285,878 to 286,201
_RS01415
ABID97_RS01420: ABID97_RS01420 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 286,214 to 287,482
_RS01420
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.163 kb on - strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.623 kb on - strand, within ABID97_RS01405 at 284.727 kb on + strand at 285.072 kb on + strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.241 kb on + strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.259 kb on - strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 286.006 kb on - strand, within ABID97_RS01415 at 286.221 kb on + strand at 286.221 kb on + strand at 286.221 kb on + strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.222 kb on - strand at 286.227 kb on + strand at 286.227 kb on + strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.228 kb on - strand at 286.246 kb on - strand at 286.266 kb on - strand at 286.491 kb on + strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.492 kb on - strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.593 kb on + strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.594 kb on - strand, within ABID97_RS01420 at 286.635 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 284,163 - ABID97_RS01405 0.39 -0.3 284,622 + ABID97_RS01405 0.88 -1.0 284,622 + ABID97_RS01405 0.88 -0.1 284,623 - ABID97_RS01405 0.88 -0.5 284,727 + -0.5 285,072 + ABID97_RS01410 0.28 -0.0 285,073 - ABID97_RS01410 0.28 +0.0 285,073 - ABID97_RS01410 0.28 -1.0 285,241 + ABID97_RS01410 0.44 -0.2 285,242 - ABID97_RS01410 0.44 -0.5 285,242 - ABID97_RS01410 0.44 -0.1 285,242 - ABID97_RS01410 0.44 -0.0 285,242 - ABID97_RS01410 0.44 -1.2 285,242 - ABID97_RS01410 0.44 -0.3 285,259 - ABID97_RS01410 0.46 +0.7 285,375 + ABID97_RS01410 0.57 +0.0 285,375 + ABID97_RS01410 0.57 -0.2 285,376 - ABID97_RS01410 0.57 -1.1 285,376 - ABID97_RS01410 0.57 -0.1 285,376 - ABID97_RS01410 0.57 -0.2 286,006 - ABID97_RS01415 0.40 -1.1 286,221 + -1.1 286,221 + +1.8 286,221 + -0.5 286,222 - -0.1 286,222 - -0.3 286,222 - -0.5 286,222 - -0.3 286,227 + -0.2 286,227 + +0.9 286,228 - -0.5 286,228 - -0.0 286,228 - +0.9 286,228 - -0.8 286,228 - +0.4 286,228 - -0.2 286,246 - -0.6 286,266 - -0.5 286,491 + ABID97_RS01420 0.22 -1.1 286,492 - ABID97_RS01420 0.22 -0.2 286,492 - ABID97_RS01420 0.22 -0.2 286,492 - ABID97_RS01420 0.22 +0.2 286,492 - ABID97_RS01420 0.22 -0.1 286,593 + ABID97_RS01420 0.30 +0.1 286,593 + ABID97_RS01420 0.30 +0.5 286,593 + ABID97_RS01420 0.30 -2.2 286,593 + ABID97_RS01420 0.30 +0.7 286,593 + ABID97_RS01420 0.30 +1.6 286,593 + ABID97_RS01420 0.30 +0.1 286,594 - ABID97_RS01420 0.30 +0.5 286,594 - ABID97_RS01420 0.30 +0.7 286,594 - ABID97_RS01420 0.30 +0.5 286,594 - ABID97_RS01420 0.30 -0.3 286,594 - ABID97_RS01420 0.30 -0.9 286,594 - ABID97_RS01420 0.30 +0.1 286,594 - ABID97_RS01420 0.30 +0.5 286,594 - ABID97_RS01420 0.30 -0.2 286,635 + ABID97_RS01420 0.33 +0.1 286,713 + ABID97_RS01420 0.39 +1.9 286,713 + ABID97_RS01420 0.39 +0.3 286,713 + ABID97_RS01420 0.39 +0.1 286,713 + ABID97_RS01420 0.39 +0.0 286,714 - ABID97_RS01420 0.39 +0.2 286,714 - ABID97_RS01420 0.39 -0.1 286,714 - ABID97_RS01420 0.39 -0.0
Or see this region's nucleotide sequence