Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01180 and ABID97_RS01185 are separated by 35 nucleotides ABID97_RS01185 and ABID97_RS01190 are separated by 3 nucleotides ABID97_RS01190 and ABID97_RS01195 are separated by 218 nucleotides
ABID97_RS01180: ABID97_RS01180 - hypothetical protein, at 242,917 to 243,255
_RS01180
ABID97_RS01185: ABID97_RS01185 - NAD(P)-dependent oxidoreductase, at 243,291 to 244,193
_RS01185
ABID97_RS01190: ABID97_RS01190 - SDR family oxidoreductase, at 244,197 to 244,958
_RS01190
ABID97_RS01195: ABID97_RS01195 - 2-hydroxyacid dehydrogenase, at 245,177 to 246,097
_RS01195
Position (kb) 244
245 Strain fitness (log2 ratio) -1
0
1 at 243.694 kb on + strand, within ABID97_RS01185 at 243.694 kb on + strand at 244.228 kb on + strand at 244.229 kb on - strand at 244.229 kb on - strand at 244.229 kb on - strand at 244.489 kb on + strand, within ABID97_RS01190 at 244.489 kb on + strand, within ABID97_RS01190 at 245.226 kb on - strand at 245.670 kb on - strand, within ABID97_RS01195
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 243,694 + ABID97_RS01185 0.45 -0.7 243,694 + +1.7 244,228 + +0.6 244,229 - +0.9 244,229 - +0.4 244,229 - -0.9 244,489 + ABID97_RS01190 0.38 +1.3 244,489 + ABID97_RS01190 0.38 -0.4 245,226 - +0.7 245,670 - ABID97_RS01195 0.54 +0.5
Or see this region's nucleotide sequence