Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00775 and ABID97_RS00780 are separated by 46 nucleotides ABID97_RS00780 and ABID97_RS00785 overlap by 4 nucleotides ABID97_RS00785 and ABID97_RS00790 are separated by 35 nucleotides ABID97_RS00790 and ABID97_RS00795 are separated by 21 nucleotides
ABID97_RS00775: ABID97_RS00775 - ABC transporter ATP-binding protein, at 153,736 to 154,509
_RS00775
ABID97_RS00780: ABID97_RS00780 - ABC transporter ATP-binding protein, at 154,556 to 155,374
_RS00780
ABID97_RS00785: ABID97_RS00785 - branched-chain amino acid ABC transporter permease, at 155,371 to 156,447
_RS00785
ABID97_RS00790: ABID97_RS00790 - branched-chain amino acid ABC transporter permease, at 156,483 to 157,358
_RS00790
ABID97_RS00795: ABID97_RS00795 - AraC family transcriptional regulator, at 157,380 to 158,207
_RS00795
Position (kb) 155
156
157 Strain fitness (log2 ratio) -1
0
1
2 at 154.498 kb on + strand at 154.603 kb on - strand at 155.206 kb on - strand, within ABID97_RS00780 at 155.525 kb on + strand, within ABID97_RS00785 at 155.795 kb on + strand, within ABID97_RS00785 at 155.933 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.077 kb on + strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.078 kb on - strand, within ABID97_RS00785 at 156.199 kb on - strand, within ABID97_RS00785 at 156.200 kb on + strand, within ABID97_RS00785 at 156.200 kb on + strand, within ABID97_RS00785 at 156.201 kb on - strand, within ABID97_RS00785 at 156.201 kb on - strand, within ABID97_RS00785 at 156.323 kb on + strand, within ABID97_RS00785 at 156.375 kb on - strand at 156.422 kb on + strand at 156.423 kb on - strand at 156.589 kb on + strand, within ABID97_RS00790 at 156.590 kb on - strand, within ABID97_RS00790 at 156.817 kb on + strand, within ABID97_RS00790 at 156.817 kb on + strand, within ABID97_RS00790 at 156.818 kb on - strand, within ABID97_RS00790 at 156.818 kb on - strand, within ABID97_RS00790 at 156.818 kb on - strand, within ABID97_RS00790 at 156.821 kb on - strand, within ABID97_RS00790 at 156.982 kb on + strand, within ABID97_RS00790 at 157.051 kb on + strand, within ABID97_RS00790 at 157.276 kb on + strand at 157.276 kb on + strand at 157.277 kb on - strand at 157.277 kb on - strand at 157.309 kb on + strand at 157.309 kb on + strand at 157.309 kb on + strand at 157.310 kb on - strand at 157.310 kb on - strand at 157.310 kb on - strand at 157.310 kb on - strand at 157.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 154,498 + -0.9 154,603 - +1.9 155,206 - ABID97_RS00780 0.79 +0.3 155,525 + ABID97_RS00785 0.14 +0.2 155,795 + ABID97_RS00785 0.39 -0.8 155,933 + ABID97_RS00785 0.52 +0.9 156,077 + ABID97_RS00785 0.66 -0.7 156,077 + ABID97_RS00785 0.66 -0.1 156,077 + ABID97_RS00785 0.66 +0.1 156,077 + ABID97_RS00785 0.66 +0.5 156,077 + ABID97_RS00785 0.66 +0.3 156,078 - ABID97_RS00785 0.66 +1.0 156,078 - ABID97_RS00785 0.66 -0.0 156,078 - ABID97_RS00785 0.66 +0.4 156,078 - ABID97_RS00785 0.66 -0.5 156,199 - ABID97_RS00785 0.77 -1.1 156,200 + ABID97_RS00785 0.77 +0.3 156,200 + ABID97_RS00785 0.77 -0.1 156,201 - ABID97_RS00785 0.77 -0.1 156,201 - ABID97_RS00785 0.77 -1.6 156,323 + ABID97_RS00785 0.88 -0.1 156,375 - +0.8 156,422 + +1.7 156,423 - -0.9 156,589 + ABID97_RS00790 0.12 -0.1 156,590 - ABID97_RS00790 0.12 -0.4 156,817 + ABID97_RS00790 0.38 -0.6 156,817 + ABID97_RS00790 0.38 -0.7 156,818 - ABID97_RS00790 0.38 +0.1 156,818 - ABID97_RS00790 0.38 +1.0 156,818 - ABID97_RS00790 0.38 -0.6 156,821 - ABID97_RS00790 0.39 +0.2 156,982 + ABID97_RS00790 0.57 -0.2 157,051 + ABID97_RS00790 0.65 +0.5 157,276 + -0.4 157,276 + +0.5 157,277 - +0.1 157,277 - +1.0 157,309 + -0.1 157,309 + +1.4 157,309 + +0.2 157,310 - +1.6 157,310 - -0.5 157,310 - +0.2 157,310 - -0.0 157,382 - +1.0
Or see this region's nucleotide sequence