Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00560

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00550 and ABID97_RS00555 are separated by 112 nucleotidesABID97_RS00555 and ABID97_RS00560 are separated by 43 nucleotidesABID97_RS00560 and ABID97_RS00565 are separated by 140 nucleotides ABID97_RS00550: ABID97_RS00550 - DUF4260 domain-containing protein, at 118,648 to 119,028 _RS00550 ABID97_RS00555: ABID97_RS00555 - Spy/CpxP family protein refolding chaperone, at 119,141 to 119,608 _RS00555 ABID97_RS00560: ABID97_RS00560 - DUF4148 domain-containing protein, at 119,652 to 120,023 _RS00560 ABID97_RS00565: ABID97_RS00565 - phosphoenolpyruvate--protein phosphotransferase, at 120,164 to 121,957 _RS00565 Position (kb) 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.706 kb on + strand, within ABID97_RS00550at 118.706 kb on + strand, within ABID97_RS00550at 118.707 kb on - strand, within ABID97_RS00550at 118.829 kb on + strand, within ABID97_RS00550at 118.847 kb on + strand, within ABID97_RS00550at 118.847 kb on + strand, within ABID97_RS00550at 118.847 kb on + strand, within ABID97_RS00550at 118.848 kb on - strand, within ABID97_RS00550at 118.880 kb on + strand, within ABID97_RS00550at 118.880 kb on + strand, within ABID97_RS00550at 118.925 kb on - strand, within ABID97_RS00550at 119.075 kb on + strandat 119.653 kb on + strandat 119.653 kb on + strandat 119.653 kb on + strandat 119.654 kb on - strandat 119.789 kb on - strand, within ABID97_RS00560at 119.789 kb on - strand, within ABID97_RS00560at 119.941 kb on + strand, within ABID97_RS00560at 119.941 kb on + strand, within ABID97_RS00560at 120.161 kb on + strandat 120.161 kb on + strandat 120.161 kb on + strandat 120.161 kb on + strandat 120.161 kb on + strandat 120.165 kb on + strandat 120.165 kb on + strandat 120.166 kb on - strandat 120.439 kb on - strand, within ABID97_RS00565at 120.439 kb on - strand, within ABID97_RS00565at 120.484 kb on - strand, within ABID97_RS00565at 120.525 kb on + strand, within ABID97_RS00565at 120.526 kb on - strand, within ABID97_RS00565at 120.526 kb on - strand, within ABID97_RS00565at 120.598 kb on - strand, within ABID97_RS00565at 120.598 kb on - strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.860 kb on + strand, within ABID97_RS00565at 120.861 kb on - strand, within ABID97_RS00565at 120.861 kb on - strand, within ABID97_RS00565at 120.861 kb on - strand, within ABID97_RS00565at 120.912 kb on + strand, within ABID97_RS00565at 120.912 kb on + strand, within ABID97_RS00565at 120.912 kb on + strand, within ABID97_RS00565at 120.912 kb on + strand, within ABID97_RS00565at 120.913 kb on - strand, within ABID97_RS00565at 120.913 kb on - strand, within ABID97_RS00565at 120.921 kb on + strand, within ABID97_RS00565at 120.922 kb on - strand, within ABID97_RS00565at 120.922 kb on - strand, within ABID97_RS00565at 120.922 kb on - strand, within ABID97_RS00565

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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118,706 + ABID97_RS00550 0.15 +0.7
118,706 + ABID97_RS00550 0.15 +0.7
118,707 - ABID97_RS00550 0.15 +0.5
118,829 + ABID97_RS00550 0.48 +0.1
118,847 + ABID97_RS00550 0.52 +0.1
118,847 + ABID97_RS00550 0.52 -0.9
118,847 + ABID97_RS00550 0.52 -0.3
118,848 - ABID97_RS00550 0.52 -0.2
118,880 + ABID97_RS00550 0.61 +0.6
118,880 + ABID97_RS00550 0.61 +0.2
118,925 - ABID97_RS00550 0.73 -0.7
119,075 + -0.7
119,653 + +0.7
119,653 + -0.2
119,653 + -1.0
119,654 - +0.3
119,789 - ABID97_RS00560 0.37 +0.8
119,789 - ABID97_RS00560 0.37 -0.2
119,941 + ABID97_RS00560 0.78 -0.5
119,941 + ABID97_RS00560 0.78 +1.2
120,161 + -0.5
120,161 + +0.0
120,161 + -0.2
120,161 + -0.0
120,161 + -0.4
120,165 + +0.1
120,165 + -0.5
120,166 - -1.0
120,439 - ABID97_RS00565 0.15 +1.4
120,439 - ABID97_RS00565 0.15 +0.6
120,484 - ABID97_RS00565 0.18 +1.3
120,525 + ABID97_RS00565 0.20 -0.1
120,526 - ABID97_RS00565 0.20 +0.4
120,526 - ABID97_RS00565 0.20 +0.7
120,598 - ABID97_RS00565 0.24 +1.4
120,598 - ABID97_RS00565 0.24 +0.4
120,860 + ABID97_RS00565 0.39 +0.2
120,860 + ABID97_RS00565 0.39 +0.5
120,860 + ABID97_RS00565 0.39 +0.7
120,860 + ABID97_RS00565 0.39 +0.2
120,860 + ABID97_RS00565 0.39 +0.3
120,860 + ABID97_RS00565 0.39 -0.2
120,861 - ABID97_RS00565 0.39 +1.2
120,861 - ABID97_RS00565 0.39 +1.1
120,861 - ABID97_RS00565 0.39 +0.7
120,912 + ABID97_RS00565 0.42 +1.0
120,912 + ABID97_RS00565 0.42 +1.7
120,912 + ABID97_RS00565 0.42 +0.8
120,912 + ABID97_RS00565 0.42 +0.5
120,913 - ABID97_RS00565 0.42 +0.7
120,913 - ABID97_RS00565 0.42 +0.9
120,921 + ABID97_RS00565 0.42 +1.1
120,922 - ABID97_RS00565 0.42 +0.5
120,922 - ABID97_RS00565 0.42 +1.6
120,922 - ABID97_RS00565 0.42 +0.4

Or see this region's nucleotide sequence