Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00405

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00395 and ABID97_RS00400 are separated by 68 nucleotidesABID97_RS00400 and ABID97_RS00405 are separated by 13 nucleotidesABID97_RS00405 and ABID97_RS00410 are separated by 96 nucleotidesABID97_RS00410 and ABID97_RS00415 overlap by 4 nucleotides ABID97_RS00395: ABID97_RS00395 - ligase-associated DNA damage response exonuclease, at 88,891 to 89,943 _RS00395 ABID97_RS00400: ABID97_RS00400 - DUF3617 family protein, at 90,012 to 90,539 _RS00400 ABID97_RS00405: ABID97_RS00405 - NAD(+) synthase, at 90,553 to 92,637 _RS00405 ABID97_RS00410: ABID97_RS00410 - hypothetical protein, at 92,734 to 93,153 _RS00410 ABID97_RS00415: ABID97_RS00415 - hypothetical protein, at 93,150 to 93,743 _RS00415 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 89.606 kb on + strand, within ABID97_RS00395at 89.606 kb on + strand, within ABID97_RS00395at 89.606 kb on + strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.607 kb on - strand, within ABID97_RS00395at 89.801 kb on + strand, within ABID97_RS00395at 89.801 kb on + strand, within ABID97_RS00395at 89.802 kb on - strand, within ABID97_RS00395at 89.802 kb on - strand, within ABID97_RS00395at 89.883 kb on - strandat 89.903 kb on + strandat 89.903 kb on + strandat 89.904 kb on - strandat 89.954 kb on - strandat 90.013 kb on + strandat 90.013 kb on + strandat 90.013 kb on + strandat 90.014 kb on - strandat 90.014 kb on - strandat 90.014 kb on - strandat 90.169 kb on + strand, within ABID97_RS00400at 90.169 kb on + strand, within ABID97_RS00400at 90.170 kb on - strand, within ABID97_RS00400at 90.170 kb on - strand, within ABID97_RS00400at 90.461 kb on - strand, within ABID97_RS00400at 90.544 kb on + strandat 90.544 kb on + strandat 90.544 kb on + strandat 90.545 kb on - strandat 90.714 kb on - strandat 90.756 kb on - strandat 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.872 kb on + strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.873 kb on - strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.875 kb on + strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.876 kb on - strand, within ABID97_RS00405at 90.900 kb on - strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.118 kb on + strand, within ABID97_RS00405at 91.119 kb on - strand, within ABID97_RS00405at 91.119 kb on - strand, within ABID97_RS00405at 91.145 kb on + strand, within ABID97_RS00405at 91.145 kb on + strand, within ABID97_RS00405at 91.274 kb on + strand, within ABID97_RS00405at 91.640 kb on + strand, within ABID97_RS00405at 91.640 kb on + strand, within ABID97_RS00405at 91.640 kb on + strand, within ABID97_RS00405at 91.641 kb on - strand, within ABID97_RS00405at 91.641 kb on - strand, within ABID97_RS00405at 91.641 kb on - strand, within ABID97_RS00405at 91.937 kb on + strand, within ABID97_RS00405at 91.938 kb on - strand, within ABID97_RS00405at 91.938 kb on - strand, within ABID97_RS00405at 91.938 kb on - strand, within ABID97_RS00405at 91.943 kb on + strand, within ABID97_RS00405at 91.944 kb on - strand, within ABID97_RS00405at 92.063 kb on + strand, within ABID97_RS00405at 92.238 kb on - strand, within ABID97_RS00405at 92.249 kb on + strand, within ABID97_RS00405at 92.261 kb on + strand, within ABID97_RS00405at 92.261 kb on + strand, within ABID97_RS00405at 92.262 kb on - strand, within ABID97_RS00405at 92.456 kb on + strandat 92.457 kb on - strandat 92.519 kb on + strandat 92.609 kb on + strandat 92.610 kb on - strandat 93.235 kb on + strand, within ABID97_RS00415at 93.236 kb on - strand, within ABID97_RS00415at 93.267 kb on - strand, within ABID97_RS00415at 93.316 kb on + strand, within ABID97_RS00415at 93.317 kb on - strand, within ABID97_RS00415at 93.610 kb on + strand, within ABID97_RS00415at 93.611 kb on - strand, within ABID97_RS00415

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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89,606 + ABID97_RS00395 0.68 -0.1
89,606 + ABID97_RS00395 0.68 -0.3
89,606 + ABID97_RS00395 0.68 +1.2
89,607 - ABID97_RS00395 0.68 -1.0
89,607 - ABID97_RS00395 0.68 -0.1
89,607 - ABID97_RS00395 0.68 +0.7
89,607 - ABID97_RS00395 0.68 +0.2
89,607 - ABID97_RS00395 0.68 -1.1
89,607 - ABID97_RS00395 0.68 +0.4
89,801 + ABID97_RS00395 0.86 +0.4
89,801 + ABID97_RS00395 0.86 -1.0
89,802 - ABID97_RS00395 0.87 +0.1
89,802 - ABID97_RS00395 0.87 -0.2
89,883 - +0.1
89,903 + -0.4
89,903 + -0.1
89,904 - -0.2
89,954 - -0.5
90,013 + +1.0
90,013 + +0.1
90,013 + -0.3
90,014 - -1.9
90,014 - +0.1
90,014 - -0.5
90,169 + ABID97_RS00400 0.30 -0.3
90,169 + ABID97_RS00400 0.30 -0.8
90,170 - ABID97_RS00400 0.30 -0.7
90,170 - ABID97_RS00400 0.30 -0.1
90,461 - ABID97_RS00400 0.85 -1.7
90,544 + -0.4
90,544 + -0.3
90,544 + -0.2
90,545 - -0.8
90,714 - +3.7
90,756 - +3.3
90,872 + ABID97_RS00405 0.15 +2.7
90,872 + ABID97_RS00405 0.15 +3.0
90,872 + ABID97_RS00405 0.15 +2.9
90,872 + ABID97_RS00405 0.15 +3.1
90,872 + ABID97_RS00405 0.15 +3.1
90,872 + ABID97_RS00405 0.15 +2.7
90,873 - ABID97_RS00405 0.15 +2.8
90,873 - ABID97_RS00405 0.15 +2.7
90,873 - ABID97_RS00405 0.15 +3.4
90,873 - ABID97_RS00405 0.15 +3.0
90,873 - ABID97_RS00405 0.15 +3.0
90,873 - ABID97_RS00405 0.15 +3.0
90,875 + ABID97_RS00405 0.15 +2.8
90,875 + ABID97_RS00405 0.15 +2.9
90,875 + ABID97_RS00405 0.15 +1.4
90,875 + ABID97_RS00405 0.15 +2.0
90,876 - ABID97_RS00405 0.15 +3.3
90,876 - ABID97_RS00405 0.15 +3.1
90,876 - ABID97_RS00405 0.15 +3.2
90,876 - ABID97_RS00405 0.15 +3.0
90,876 - ABID97_RS00405 0.15 +3.2
90,900 - ABID97_RS00405 0.17 +2.8
91,118 + ABID97_RS00405 0.27 +3.1
91,118 + ABID97_RS00405 0.27 +2.4
91,118 + ABID97_RS00405 0.27 +3.0
91,119 - ABID97_RS00405 0.27 +3.0
91,119 - ABID97_RS00405 0.27 +3.1
91,145 + ABID97_RS00405 0.28 +2.9
91,145 + ABID97_RS00405 0.28 +2.8
91,274 + ABID97_RS00405 0.35 +3.1
91,640 + ABID97_RS00405 0.52 +2.1
91,640 + ABID97_RS00405 0.52 +2.4
91,640 + ABID97_RS00405 0.52 +2.6
91,641 - ABID97_RS00405 0.52 +1.8
91,641 - ABID97_RS00405 0.52 +2.2
91,641 - ABID97_RS00405 0.52 +2.0
91,937 + ABID97_RS00405 0.66 +3.0
91,938 - ABID97_RS00405 0.66 +3.9
91,938 - ABID97_RS00405 0.66 +2.7
91,938 - ABID97_RS00405 0.66 +3.1
91,943 + ABID97_RS00405 0.67 +3.0
91,944 - ABID97_RS00405 0.67 +3.1
92,063 + ABID97_RS00405 0.72 +2.9
92,238 - ABID97_RS00405 0.81 +2.6
92,249 + ABID97_RS00405 0.81 +2.9
92,261 + ABID97_RS00405 0.82 +2.5
92,261 + ABID97_RS00405 0.82 +3.0
92,262 - ABID97_RS00405 0.82 +2.9
92,456 + +2.5
92,457 - +2.9
92,519 + +2.8
92,609 + +3.0
92,610 - +3.0
93,235 + ABID97_RS00415 0.14 -0.6
93,236 - ABID97_RS00415 0.14 -0.7
93,267 - ABID97_RS00415 0.20 -0.5
93,316 + ABID97_RS00415 0.28 -0.6
93,317 - ABID97_RS00415 0.28 -0.6
93,610 + ABID97_RS00415 0.77 -0.5
93,611 - ABID97_RS00415 0.78 +0.8

Or see this region's nucleotide sequence