Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00135 and ABID97_RS00140 are separated by 19 nucleotides ABID97_RS00140 and ABID97_RS00145 are separated by 86 nucleotides ABID97_RS00145 and ABID97_RS00150 are separated by 41 nucleotides ABID97_RS00150 and ABID97_RS00155 are separated by 17 nucleotides
ABID97_RS00135: ABID97_RS00135 - cytochrome P450, at 31,581 to 34,805
_RS00135
ABID97_RS00140: ABID97_RS00140 - alpha/beta hydrolase, at 34,825 to 35,598
_RS00140
ABID97_RS00145: ABID97_RS00145 - TetR/AcrR family transcriptional regulator, at 35,685 to 36,320
_RS00145
ABID97_RS00150: ABID97_RS00150 - phasin family protein, at 36,362 to 36,883
_RS00150
ABID97_RS00155: ABID97_RS00155 - hypothetical protein, at 36,901 to 37,452
_RS00155
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 34.803 kb on + strand at 34.928 kb on + strand, within ABID97_RS00140 at 34.928 kb on + strand, within ABID97_RS00140 at 34.928 kb on + strand, within ABID97_RS00140 at 34.928 kb on + strand, within ABID97_RS00140 at 34.929 kb on - strand, within ABID97_RS00140 at 34.929 kb on - strand, within ABID97_RS00140 at 34.929 kb on - strand, within ABID97_RS00140 at 35.135 kb on + strand, within ABID97_RS00140 at 35.136 kb on - strand, within ABID97_RS00140 at 35.240 kb on + strand, within ABID97_RS00140 at 35.240 kb on + strand, within ABID97_RS00140 at 35.240 kb on + strand, within ABID97_RS00140 at 35.240 kb on + strand, within ABID97_RS00140 at 35.240 kb on + strand, within ABID97_RS00140 at 35.399 kb on + strand, within ABID97_RS00140 at 35.400 kb on - strand, within ABID97_RS00140 at 35.629 kb on + strand at 35.630 kb on - strand at 35.630 kb on - strand at 35.630 kb on - strand at 35.695 kb on + strand at 35.695 kb on + strand at 35.695 kb on + strand at 35.696 kb on - strand at 35.711 kb on - strand at 35.711 kb on - strand at 35.719 kb on + strand at 35.719 kb on + strand at 35.719 kb on + strand at 35.720 kb on - strand at 35.720 kb on - strand at 35.720 kb on - strand at 35.768 kb on - strand, within ABID97_RS00145 at 36.026 kb on - strand, within ABID97_RS00145 at 36.187 kb on + strand, within ABID97_RS00145 at 36.187 kb on + strand, within ABID97_RS00145 at 36.188 kb on - strand, within ABID97_RS00145 at 36.188 kb on - strand, within ABID97_RS00145
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 34,803 + -0.1 34,928 + ABID97_RS00140 0.13 -0.4 34,928 + ABID97_RS00140 0.13 -0.3 34,928 + ABID97_RS00140 0.13 -0.5 34,928 + ABID97_RS00140 0.13 -0.7 34,929 - ABID97_RS00140 0.13 -0.6 34,929 - ABID97_RS00140 0.13 -0.3 34,929 - ABID97_RS00140 0.13 -0.3 35,135 + ABID97_RS00140 0.40 -0.8 35,136 - ABID97_RS00140 0.40 +0.2 35,240 + ABID97_RS00140 0.54 -0.6 35,240 + ABID97_RS00140 0.54 -0.1 35,240 + ABID97_RS00140 0.54 +0.7 35,240 + ABID97_RS00140 0.54 -1.4 35,240 + ABID97_RS00140 0.54 +2.4 35,399 + ABID97_RS00140 0.74 -0.0 35,400 - ABID97_RS00140 0.74 -0.4 35,629 + +0.0 35,630 - -0.7 35,630 - +0.1 35,630 - -1.2 35,695 + +1.5 35,695 + +1.7 35,695 + -0.1 35,696 - +0.9 35,711 - +0.4 35,711 - -0.4 35,719 + +0.7 35,719 + -0.5 35,719 + -0.1 35,720 - -0.1 35,720 - +0.8 35,720 - +0.3 35,768 - ABID97_RS00145 0.13 -0.5 36,026 - ABID97_RS00145 0.54 +0.5 36,187 + ABID97_RS00145 0.79 -0.6 36,187 + ABID97_RS00145 0.79 +0.0 36,188 - ABID97_RS00145 0.79 -0.8 36,188 - ABID97_RS00145 0.79 +0.2
Or see this region's nucleotide sequence