Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04873 and PFR28_04874 are separated by 178 nucleotides PFR28_04874 and PFR28_04875 are separated by 175 nucleotides PFR28_04875 and PFR28_04876 are separated by 269 nucleotides PFR28_04876 and PFR28_04877 overlap by 4 nucleotides
PFR28_04873: PFR28_04873 - 33 kDa chaperonin, at 5,567,253 to 5,568,155
_04873
PFR28_04874: PFR28_04874 - Phosphoenolpyruvate carboxykinase (ATP), at 5,568,334 to 5,569,875
_04874
PFR28_04875: PFR28_04875 - hypothetical protein, at 5,570,051 to 5,570,317
_04875
PFR28_04876: PFR28_04876 - hypothetical protein, at 5,570,587 to 5,570,778
_04876
PFR28_04877: PFR28_04877 - Extracellular serine protease, at 5,570,775 to 5,571,839
_04877
Position (kb) 5568
5569
5570 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5567.343 kb on + strand at 5567.343 kb on + strand at 5567.344 kb on - strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.692 kb on - strand, within PFR28_04873 at 5567.692 kb on - strand, within PFR28_04873 at 5567.733 kb on + strand, within PFR28_04873 at 5567.734 kb on - strand, within PFR28_04873 at 5567.905 kb on - strand, within PFR28_04873 at 5568.078 kb on + strand at 5568.078 kb on + strand at 5568.078 kb on + strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.144 kb on - strand at 5568.205 kb on - strand at 5568.272 kb on - strand at 5568.289 kb on + strand at 5568.349 kb on - strand at 5568.349 kb on - strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.491 kb on + strand, within PFR28_04874 at 5568.491 kb on + strand, within PFR28_04874 at 5568.491 kb on + strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.629 kb on + strand, within PFR28_04874 at 5568.630 kb on - strand, within PFR28_04874 at 5568.649 kb on + strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.728 kb on - strand, within PFR28_04874 at 5568.868 kb on + strand, within PFR28_04874 at 5569.040 kb on - strand, within PFR28_04874 at 5569.106 kb on - strand, within PFR28_04874 at 5569.216 kb on + strand, within PFR28_04874 at 5569.217 kb on - strand, within PFR28_04874 at 5569.308 kb on + strand, within PFR28_04874 at 5569.346 kb on + strand, within PFR28_04874 at 5569.346 kb on + strand, within PFR28_04874 at 5569.347 kb on - strand, within PFR28_04874 at 5569.387 kb on + strand, within PFR28_04874 at 5569.387 kb on + strand, within PFR28_04874 at 5569.388 kb on - strand, within PFR28_04874 at 5569.388 kb on - strand, within PFR28_04874 at 5569.533 kb on + strand, within PFR28_04874 at 5569.534 kb on - strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.559 kb on - strand, within PFR28_04874 at 5569.559 kb on - strand, within PFR28_04874 at 5569.755 kb on + strand at 5569.755 kb on + strand at 5569.756 kb on - strand at 5569.756 kb on - strand at 5569.756 kb on - strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.874 kb on - strand at 5569.874 kb on - strand at 5569.874 kb on - strand at 5569.932 kb on - strand at 5570.309 kb on + strand at 5570.310 kb on - strand at 5570.357 kb on + strand at 5570.357 kb on + strand at 5570.357 kb on + strand at 5570.358 kb on - strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.377 kb on + strand at 5570.386 kb on - strand at 5570.386 kb on - strand at 5570.409 kb on + strand at 5570.410 kb on - strand at 5570.410 kb on - strand at 5570.515 kb on + strand at 5570.515 kb on + strand at 5570.537 kb on - strand at 5570.541 kb on + strand at 5570.541 kb on + strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.589 kb on - strand at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.672 kb on - strand, within PFR28_04876 at 5570.764 kb on - strand at 5570.839 kb on + strand at 5570.839 kb on + strand at 5570.857 kb on + strand at 5570.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 5,567,343 + -0.0 5,567,343 + -3.7 5,567,344 - PFR28_04873 0.10 -1.4 5,567,691 + PFR28_04873 0.49 +1.9 5,567,691 + PFR28_04873 0.49 +0.2 5,567,691 + PFR28_04873 0.49 -1.1 5,567,691 + PFR28_04873 0.49 -1.5 5,567,691 + PFR28_04873 0.49 -0.7 5,567,692 - PFR28_04873 0.49 -1.1 5,567,692 - PFR28_04873 0.49 -0.1 5,567,733 + PFR28_04873 0.53 +1.1 5,567,734 - PFR28_04873 0.53 +0.8 5,567,905 - PFR28_04873 0.72 -0.2 5,568,078 + +0.7 5,568,078 + -1.6 5,568,078 + -0.9 5,568,079 - +0.3 5,568,079 - -0.2 5,568,079 - -0.5 5,568,079 - +0.1 5,568,079 - +0.1 5,568,144 - -0.3 5,568,205 - -2.7 5,568,272 - -2.8 5,568,289 + +0.9 5,568,349 - -2.9 5,568,349 - -3.4 5,568,358 + -3.6 5,568,358 + -5.2 5,568,358 + -2.3 5,568,358 + -0.0 5,568,358 + -1.6 5,568,358 + -3.4 5,568,359 - -3.0 5,568,359 - -3.7 5,568,359 - -2.2 5,568,359 - -3.0 5,568,359 - -0.3 5,568,491 + PFR28_04874 0.10 -4.0 5,568,491 + PFR28_04874 0.10 -3.2 5,568,491 + PFR28_04874 0.10 -1.6 5,568,492 - PFR28_04874 0.10 -3.1 5,568,492 - PFR28_04874 0.10 -2.5 5,568,492 - PFR28_04874 0.10 -1.9 5,568,492 - PFR28_04874 0.10 -2.7 5,568,492 - PFR28_04874 0.10 -0.8 5,568,629 + PFR28_04874 0.19 -3.9 5,568,630 - PFR28_04874 0.19 -2.4 5,568,649 + PFR28_04874 0.20 -2.1 5,568,650 - PFR28_04874 0.20 -0.4 5,568,650 - PFR28_04874 0.20 -2.8 5,568,650 - PFR28_04874 0.20 -0.8 5,568,727 + PFR28_04874 0.25 -1.2 5,568,727 + PFR28_04874 0.25 -2.6 5,568,727 + PFR28_04874 0.25 -1.7 5,568,727 + PFR28_04874 0.25 -2.6 5,568,728 - PFR28_04874 0.26 -3.1 5,568,868 + PFR28_04874 0.35 -3.8 5,569,040 - PFR28_04874 0.46 -1.0 5,569,106 - PFR28_04874 0.50 -1.2 5,569,216 + PFR28_04874 0.57 -0.5 5,569,217 - PFR28_04874 0.57 +0.2 5,569,308 + PFR28_04874 0.63 -1.3 5,569,346 + PFR28_04874 0.66 -0.8 5,569,346 + PFR28_04874 0.66 -1.4 5,569,347 - PFR28_04874 0.66 -1.1 5,569,387 + PFR28_04874 0.68 -3.3 5,569,387 + PFR28_04874 0.68 -1.5 5,569,388 - PFR28_04874 0.68 -3.5 5,569,388 - PFR28_04874 0.68 -1.2 5,569,533 + PFR28_04874 0.78 -0.7 5,569,534 - PFR28_04874 0.78 -2.5 5,569,558 + PFR28_04874 0.79 -4.1 5,569,558 + PFR28_04874 0.79 -3.7 5,569,558 + PFR28_04874 0.79 -1.6 5,569,558 + PFR28_04874 0.79 -2.6 5,569,558 + PFR28_04874 0.79 -0.9 5,569,559 - PFR28_04874 0.79 -0.9 5,569,559 - PFR28_04874 0.79 +0.0 5,569,755 + -2.7 5,569,755 + -2.8 5,569,756 - -4.3 5,569,756 - -2.5 5,569,756 - -3.8 5,569,873 + +0.8 5,569,873 + +0.4 5,569,873 + -0.7 5,569,873 + -0.6 5,569,873 + -2.1 5,569,873 + -0.8 5,569,873 + +0.1 5,569,874 - +0.1 5,569,874 - +0.3 5,569,874 - +0.2 5,569,932 - +3.4 5,570,309 + +0.0 5,570,310 - +0.1 5,570,357 + +0.6 5,570,357 + -0.2 5,570,357 + -0.8 5,570,358 - -1.7 5,570,359 + -0.4 5,570,359 + +0.3 5,570,359 + +0.5 5,570,359 + -0.7 5,570,359 + -0.2 5,570,359 + +0.3 5,570,359 + -0.0 5,570,360 - -0.5 5,570,360 - +1.0 5,570,360 - +1.0 5,570,360 - -0.7 5,570,360 - +0.0 5,570,360 - +0.7 5,570,377 + -0.4 5,570,386 - -1.8 5,570,386 - -0.9 5,570,409 + +0.5 5,570,410 - -0.8 5,570,410 - +0.1 5,570,515 + -0.3 5,570,515 + -0.7 5,570,537 - +1.0 5,570,541 + -2.6 5,570,541 + +0.6 5,570,542 - -0.0 5,570,542 - -1.4 5,570,542 - +0.3 5,570,542 - -2.2 5,570,542 - +0.2 5,570,589 - +0.8 5,570,671 + PFR28_04876 0.44 +0.2 5,570,671 + PFR28_04876 0.44 -0.7 5,570,671 + PFR28_04876 0.44 +0.4 5,570,671 + PFR28_04876 0.44 -0.6 5,570,671 + PFR28_04876 0.44 +0.7 5,570,672 - PFR28_04876 0.44 -0.1 5,570,764 - +1.2 5,570,839 + -2.1 5,570,839 + -0.6 5,570,857 + -0.5 5,570,858 - +0.0
Or see this region's nucleotide sequence