Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04735 and PFR28_04736 are separated by 118 nucleotides PFR28_04736 and PFR28_04737 are separated by 155 nucleotides PFR28_04737 and PFR28_04738 are separated by 241 nucleotides
PFR28_04735: PFR28_04735 - 5S ribosomal RNA, at 5,390,794 to 5,390,903
_04735
PFR28_04736: PFR28_04736 - hypothetical protein, at 5,391,022 to 5,391,723
_04736
PFR28_04737: PFR28_04737 - Protein YdgA, at 5,391,879 to 5,393,384
_04737
PFR28_04738: PFR28_04738 - Poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 5,393,626 to 5,396,106
_04738
Position (kb) 5391
5392
5393
5394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5390.892 kb on + strand, within PFR28_04735 at 5390.892 kb on + strand, within PFR28_04735 at 5390.938 kb on + strand at 5390.939 kb on - strand at 5390.939 kb on - strand at 5390.939 kb on - strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.100 kb on + strand, within PFR28_04736 at 5391.150 kb on + strand, within PFR28_04736 at 5391.151 kb on - strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.160 kb on + strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.234 kb on - strand, within PFR28_04736 at 5391.234 kb on - strand, within PFR28_04736 at 5391.373 kb on + strand, within PFR28_04736 at 5391.374 kb on - strand, within PFR28_04736 at 5391.374 kb on - strand, within PFR28_04736 at 5391.388 kb on + strand, within PFR28_04736 at 5391.389 kb on - strand, within PFR28_04736 at 5391.389 kb on - strand, within PFR28_04736 at 5391.405 kb on + strand, within PFR28_04736 at 5391.405 kb on + strand, within PFR28_04736 at 5391.406 kb on - strand, within PFR28_04736 at 5391.406 kb on - strand, within PFR28_04736 at 5391.493 kb on - strand, within PFR28_04736 at 5391.493 kb on - strand, within PFR28_04736 at 5391.562 kb on - strand, within PFR28_04736 at 5391.562 kb on - strand, within PFR28_04736 at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.656 kb on - strand at 5391.656 kb on - strand at 5391.715 kb on + strand at 5391.785 kb on + strand at 5391.884 kb on + strand at 5391.884 kb on + strand at 5391.885 kb on - strand at 5391.885 kb on - strand at 5391.898 kb on + strand at 5391.899 kb on - strand at 5391.899 kb on - strand at 5391.951 kb on + strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5392.001 kb on + strand at 5392.001 kb on + strand at 5392.001 kb on + strand at 5392.002 kb on - strand at 5392.002 kb on - strand at 5392.157 kb on - strand, within PFR28_04737 at 5392.157 kb on - strand, within PFR28_04737 at 5392.164 kb on - strand, within PFR28_04737 at 5392.235 kb on + strand, within PFR28_04737 at 5392.236 kb on - strand, within PFR28_04737 at 5392.289 kb on + strand, within PFR28_04737 at 5392.323 kb on + strand, within PFR28_04737 at 5392.343 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.462 kb on - strand, within PFR28_04737 at 5392.564 kb on - strand, within PFR28_04737 at 5392.570 kb on - strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.604 kb on + strand, within PFR28_04737 at 5392.604 kb on + strand, within PFR28_04737 at 5392.605 kb on - strand, within PFR28_04737 at 5392.605 kb on - strand, within PFR28_04737 at 5392.711 kb on - strand, within PFR28_04737 at 5392.819 kb on - strand, within PFR28_04737 at 5392.819 kb on - strand, within PFR28_04737 at 5393.024 kb on + strand, within PFR28_04737 at 5393.025 kb on - strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.144 kb on - strand, within PFR28_04737 at 5393.144 kb on - strand, within PFR28_04737 at 5393.283 kb on + strand at 5393.284 kb on - strand at 5393.284 kb on - strand at 5393.284 kb on - strand at 5393.326 kb on + strand at 5393.327 kb on - strand at 5393.327 kb on - strand at 5393.327 kb on - strand at 5393.359 kb on + strand at 5393.360 kb on - strand at 5393.360 kb on - strand at 5393.360 kb on - strand at 5393.382 kb on + strand at 5393.383 kb on - strand at 5393.536 kb on + strand at 5393.536 kb on + strand at 5393.537 kb on - strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.634 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.649 kb on + strand at 5393.650 kb on - strand at 5393.650 kb on - strand at 5393.650 kb on - strand at 5393.890 kb on + strand, within PFR28_04738 at 5393.959 kb on - strand, within PFR28_04738 at 5394.151 kb on + strand, within PFR28_04738 at 5394.151 kb on + strand, within PFR28_04738 at 5394.247 kb on + strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.250 kb on - strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 5,390,892 + PFR28_04735 0.89 -0.4 5,390,892 + PFR28_04735 0.89 -0.2 5,390,938 + -1.2 5,390,939 - -0.2 5,390,939 - +1.1 5,390,939 - -1.9 5,391,012 + +1.6 5,391,012 + +0.7 5,391,012 + +0.7 5,391,012 + +0.1 5,391,013 - -0.2 5,391,013 - -1.0 5,391,013 - -0.5 5,391,013 - +0.3 5,391,058 + +0.7 5,391,058 + -0.8 5,391,058 + +0.2 5,391,058 + -2.0 5,391,058 + +0.5 5,391,058 + -1.1 5,391,058 + -0.0 5,391,058 + +1.9 5,391,059 - -3.2 5,391,059 - +0.2 5,391,059 - -0.2 5,391,059 - +0.3 5,391,059 - +0.1 5,391,059 - +1.0 5,391,059 - -0.6 5,391,059 - +0.1 5,391,059 - +0.4 5,391,059 - +1.6 5,391,059 - -1.1 5,391,100 + PFR28_04736 0.11 -0.5 5,391,150 + PFR28_04736 0.18 +0.4 5,391,151 - PFR28_04736 0.18 -0.2 5,391,154 + PFR28_04736 0.19 +0.8 5,391,154 + PFR28_04736 0.19 +0.0 5,391,154 + PFR28_04736 0.19 +0.3 5,391,154 + PFR28_04736 0.19 +0.5 5,391,154 + PFR28_04736 0.19 -0.7 5,391,154 + PFR28_04736 0.19 +0.5 5,391,154 + PFR28_04736 0.19 -0.1 5,391,154 + PFR28_04736 0.19 -0.7 5,391,155 - PFR28_04736 0.19 -1.1 5,391,155 - PFR28_04736 0.19 +1.5 5,391,155 - PFR28_04736 0.19 +0.2 5,391,155 - PFR28_04736 0.19 -0.5 5,391,155 - PFR28_04736 0.19 +0.1 5,391,155 - PFR28_04736 0.19 -0.2 5,391,155 - PFR28_04736 0.19 +0.8 5,391,155 - PFR28_04736 0.19 -0.2 5,391,155 - PFR28_04736 0.19 +0.1 5,391,155 - PFR28_04736 0.19 +0.2 5,391,160 + PFR28_04736 0.20 +1.1 5,391,161 - PFR28_04736 0.20 +0.5 5,391,161 - PFR28_04736 0.20 -2.2 5,391,161 - PFR28_04736 0.20 -1.0 5,391,234 - PFR28_04736 0.30 -0.3 5,391,234 - PFR28_04736 0.30 -1.7 5,391,373 + PFR28_04736 0.50 -0.4 5,391,374 - PFR28_04736 0.50 -0.3 5,391,374 - PFR28_04736 0.50 -0.6 5,391,388 + PFR28_04736 0.52 +0.6 5,391,389 - PFR28_04736 0.52 -0.6 5,391,389 - PFR28_04736 0.52 +0.0 5,391,405 + PFR28_04736 0.55 -0.9 5,391,405 + PFR28_04736 0.55 +0.6 5,391,406 - PFR28_04736 0.55 -1.1 5,391,406 - PFR28_04736 0.55 -0.5 5,391,493 - PFR28_04736 0.67 -0.7 5,391,493 - PFR28_04736 0.67 +0.1 5,391,562 - PFR28_04736 0.77 +1.1 5,391,562 - PFR28_04736 0.77 +1.6 5,391,655 + +0.5 5,391,655 + +0.5 5,391,655 + +0.1 5,391,655 + +0.5 5,391,656 - -1.1 5,391,656 - +0.1 5,391,715 + +0.6 5,391,785 + -0.2 5,391,884 + +0.4 5,391,884 + +1.2 5,391,885 - -0.2 5,391,885 - -1.0 5,391,898 + -1.3 5,391,899 - -0.7 5,391,899 - -2.1 5,391,951 + -1.7 5,391,952 - -0.3 5,391,952 - -3.1 5,391,952 - +1.2 5,391,952 - -1.2 5,391,952 - -0.6 5,392,001 + +0.4 5,392,001 + +0.1 5,392,001 + +0.3 5,392,002 - -0.8 5,392,002 - -0.4 5,392,157 - PFR28_04737 0.18 -1.6 5,392,157 - PFR28_04737 0.18 -0.2 5,392,164 - PFR28_04737 0.19 -0.8 5,392,235 + PFR28_04737 0.24 -0.2 5,392,236 - PFR28_04737 0.24 -1.3 5,392,289 + PFR28_04737 0.27 -0.5 5,392,323 + PFR28_04737 0.29 -0.8 5,392,343 + PFR28_04737 0.31 -1.1 5,392,461 + PFR28_04737 0.39 -1.4 5,392,461 + PFR28_04737 0.39 -0.1 5,392,461 + PFR28_04737 0.39 +1.4 5,392,461 + PFR28_04737 0.39 -0.9 5,392,461 + PFR28_04737 0.39 -0.3 5,392,462 - PFR28_04737 0.39 -1.7 5,392,564 - PFR28_04737 0.45 -2.3 5,392,570 - PFR28_04737 0.46 -0.3 5,392,572 + PFR28_04737 0.46 -0.4 5,392,572 + PFR28_04737 0.46 -1.1 5,392,572 + PFR28_04737 0.46 +0.7 5,392,572 + PFR28_04737 0.46 -0.2 5,392,572 + PFR28_04737 0.46 -0.3 5,392,572 + PFR28_04737 0.46 -0.6 5,392,572 + PFR28_04737 0.46 +0.6 5,392,573 - PFR28_04737 0.46 -0.5 5,392,573 - PFR28_04737 0.46 -1.0 5,392,573 - PFR28_04737 0.46 -1.6 5,392,573 - PFR28_04737 0.46 -0.4 5,392,604 + PFR28_04737 0.48 -2.7 5,392,604 + PFR28_04737 0.48 -0.4 5,392,605 - PFR28_04737 0.48 -0.6 5,392,605 - PFR28_04737 0.48 -0.4 5,392,711 - PFR28_04737 0.55 -2.0 5,392,819 - PFR28_04737 0.62 -2.3 5,392,819 - PFR28_04737 0.62 +0.8 5,393,024 + PFR28_04737 0.76 -0.5 5,393,025 - PFR28_04737 0.76 -1.0 5,393,143 + PFR28_04737 0.84 +0.3 5,393,143 + PFR28_04737 0.84 -0.3 5,393,143 + PFR28_04737 0.84 +0.1 5,393,144 - PFR28_04737 0.84 -1.8 5,393,144 - PFR28_04737 0.84 -1.4 5,393,283 + -1.2 5,393,284 - -2.3 5,393,284 - +0.1 5,393,284 - -0.3 5,393,326 + -0.9 5,393,327 - -2.0 5,393,327 - +0.9 5,393,327 - -0.2 5,393,359 + -0.7 5,393,360 - -0.6 5,393,360 - +0.9 5,393,360 - -0.4 5,393,382 + +0.7 5,393,383 - +0.3 5,393,536 + -0.3 5,393,536 + -0.1 5,393,537 - -1.3 5,393,611 + -0.2 5,393,611 + -0.4 5,393,611 + -1.3 5,393,611 + -1.2 5,393,611 + +0.7 5,393,611 + -1.3 5,393,611 + +0.5 5,393,611 + -0.6 5,393,611 + -0.9 5,393,611 + +0.0 5,393,611 + +0.3 5,393,611 + +0.2 5,393,611 + -0.8 5,393,611 + -2.5 5,393,611 + +0.7 5,393,611 + +0.2 5,393,612 - +2.1 5,393,612 - +0.4 5,393,612 - +0.4 5,393,612 - +1.1 5,393,612 - +0.2 5,393,612 - -0.3 5,393,612 - -1.8 5,393,612 - -0.5 5,393,612 - +0.7 5,393,634 + +0.5 5,393,639 + +0.6 5,393,639 + +0.0 5,393,639 + +1.3 5,393,639 + +0.4 5,393,639 + +0.4 5,393,639 + -0.4 5,393,639 + +1.2 5,393,640 - +0.8 5,393,640 - -3.2 5,393,640 - +0.6 5,393,640 - -0.6 5,393,640 - +1.3 5,393,649 + -0.3 5,393,650 - +0.1 5,393,650 - +1.1 5,393,650 - -2.3 5,393,890 + PFR28_04738 0.11 -1.4 5,393,959 - PFR28_04738 0.13 -0.3 5,394,151 + PFR28_04738 0.21 -0.1 5,394,151 + PFR28_04738 0.21 +1.3 5,394,247 + PFR28_04738 0.25 +0.4 5,394,248 - PFR28_04738 0.25 -0.3 5,394,248 - PFR28_04738 0.25 -0.3 5,394,248 - PFR28_04738 0.25 -0.2 5,394,248 - PFR28_04738 0.25 -1.7 5,394,250 - PFR28_04738 0.25 +2.2 5,394,332 + PFR28_04738 0.28 +1.1 5,394,332 + PFR28_04738 0.28 +0.6 5,394,332 + PFR28_04738 0.28 +1.0
Or see this region's nucleotide sequence